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QUESTION 1
T or F: A biochemical reaction, without a catalyst or thermodynamic coupling, takes 50 years to reach a
state of equilibrium. W/o more information, we cannot make a determination on either the value of the
Keq constant or the positive or negative value of the DeltaG of the reaction
False
QUESTION 2
T or F: Due to its small size, the amino acid glycine can be found in tight turns in a protein structure
True
QUESTION 3
T or F: The Delta G of a reaction is defined as the energy required to bring the concentration of reactants
and products to equal concentration
False
QUESTION 4
T or F: One strength of NMR is that it can detect multiple conformations of proteins and one of its
limitations is that proteins must contain certain isotopes
True
QUESTION 5
T or F: A single residue mutation to an enzyme decreases its rate constant by one half. This means the
reaction now occurs more slowly.
,True
QUESTION 6
T or F: The hydrophobic packing of non-polar residues is thermodynamically favorable b/c of both the
hydrophobic effect and a larger number of weak van der waals
True
QUESTION 7
T or F: The classic experiment in which the protein ribonuclease A is first denatured and reduced, then
refolded, was used to demonstrate the role of aromatic residues in stabilizing covalent disulfide bonds
False
QUESTION 8
T or F: One reason that we require myoglobin and hemoglobin to store and transport oxygen is b/c
oxygen itself has very poor solubility in water
True
QUESTION 9
T or F: A mutation in myoglobin that changes the distal histidine into alanine will result in a lower P50
False
QUESTION 10
The stability of an alpha helix is partly due to hydrogen bonding that occurs between carbonyl oxygen of
one helix and the amino hydrogen of a neighboring alpha helix
False
QUESTION 11
Which of the following statements if true regarding the hydrophobic effect
Non-polar molecules are driven together in order to maximize the entropy of water
, QUESTION 12
The peptide in question 17 is dissolved into a soln that has a pH of 6.5. Under these conditions, the net
charge of the peptide is
+1
QUESTION 13
A glycine residue is disruptive to the stability of an alpha helix or a beta strand because
It's R group is too small to participate in stabilizing interactions with neighboring R groups
QUESTION 14
With a pKA of 6.37, the carbonic acid/bicarbonate system serves to buffer changes to the pH of blood.
The acid dissociates as follows
H2CO3 + H20 ----> (DOUBLEARROW) HCO3- + H3O+
If a solution of .5 M carbonic acid is adjusted to a pH of 2.5, the primary form of the buffer will be:
H2CO3
QUESTION 15
Most non-polar residues are located on the interior of a protein fold, but are occasionally found on
surfaces where they can mediate protein interactions. The molecular basis of a hypothetical infectious
disease is that a bacterial protein interacts with a human protein by sharing a non-polar surface. Your
goal as a researcher is to find a way to disrupt this interaction. Which of the following surface mutations
are most likely to disrupt the protein interaction?
leucine-->glutamine
QUESTION 16
You've discovered a new species of rodent living at a very high altitude, where the partial pressure of
oxygen is low. What would you predict regarding the oxygen-binding capacity of this new species?
It's hemoglobin will have a very low P50 value AND The primary amino acid sequence of its
hemoglobin will not be identical to that of a species living in an oxygen-rich atmosphere
QUESTION 17