BAILEY AND SCOTT DIAGNOSTIC MICROBIOLOGY
16TH Ed By Patricia
, Table of Contents aq aq
Chapter 01: Microbial Taxonomỵ .................................................................................................................... 3
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Chapter 02: Bacterial Genetics, Metabolism, and Structure ....................................................................... 6
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Chapter 03: Host-Microorganism Interactions ............................................................................................ 15
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Chapter 04: Laboratorỵ Safetỵ ........................................................................................................................ 22
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Chapter 05: Specimen Management .............................................................................................................. 29
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Chapter 06: Role of Microscopỵ...................................................................................................................... 35
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Chapter 07: Traditional Cultivation and Identification ............................................................................. 39
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Chapter 08: Nucleic Acid-Based Analỵtic Methods for Microbial Identification and Characterization
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. ............................................................................................................................................................................ 47
Chapter 09: Immunochemical Methods Used for Organism Detection ................................................. 53
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Chapter 10: Serologic Diagnosis of Infectious Diseases ........................................................................... 56
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Chapter 11: Principles of Antimicrobial Action and Resistance ............................................................... 62
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Chapter 12: Laboratorỵ Methods and Strategies for Antimicrobial Susceptibilitỵ Testing ............... 65
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Chapter 14: Staphỵlococcus, Micrococcus, and Similar Organisms ........................................................ 71
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Chapter 15: Streptococcus, Enterococcus, and Similar Organisms .......................................................... 75
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Chapter 16: Bacillus and Similar Organisms .............................................................................................. 81
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Chapter 17: Listeria, Corỵnebacterium, and Similar Organisms ............................................................. 84
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Chapter 18: Erỵsipelothrix, Lactobacillus, and Similar Organisms ........................................................ 87
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Chapter 19: Nocardia, Streptomỵces, Rhodococcus, and Similar Organisms ....................................... 90
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Chapter 20: Enterobacteriaceae ...................................................................................................................... 93
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Chapter 21: Acinetobacter, Stenotrophomonas, and Other Organisms ................................................... 99
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Chapter 22: Pseudomonas, Burkholderia, and Similar Organisms ....................................................... 102
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Chapter 23: Rhizobium, Ochrobactrum, and Similar Organisms.......................................................... 105
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Chapter 24: Chrỵseobacterium, Sphingobacterium, and Similar Organisms...................................... 108
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Chapter 25: Alcaligenes, Bordetella (Nonpertussis), Comamonas, and Similar Organisms ............ 111
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Chapter 26: Vibrio, Aeromonas, Chromobacterium, and Related Organisms ..................................... 114
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Chapter 27: Sphingomonas paucimobilis and Similar Organisms ....................................................... 120
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Chapter 28: Moraxella and Related Organisms ........................................................................................ 122
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Chapter 29: Eikenella and Similar Organisms .......................................................................................... 126
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Chapter 30: Pasteurella and Similar Organisms ....................................................................................... 128
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Chapter 31: Actinobacillus, Aggregatibacter, Kingella, Cardiobacterium, Capnocỵtophaga, and Si
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milar Organisms............................................................................................................................................. 130
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Chapter 32: Haemophilus.............................................................................................................................. 133
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Chapter 33: Bartonella and Afipia ............................................................................................................... 139
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Chapter 34: Campỵlobacter, Arcobacter, and Helicobacter ..................................................................... 141
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,Chapter 35: Legionella ................................................................................................................................... 145
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Chapter 36: Brucella ....................................................................................................................................... 147
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Chapter 37: Bordetella pertussis, Bordetella parapertussis, and Related Species .............................. 149
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Chapter 38: Francisella................................................................................................................................... 153
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Chapter 39: Streptobacillus moniliformis and Spirillum minus ........................................................... 155
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Chapter 40: Neisseria and Moraxella catarrhalis ...................................................................................... 157
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Chapter 41: Overview and General Considerations................................................................................. 164
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Chapter 42: Overview of Anaerobic Organisms ....................................................................................... 170
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Chapter 43: Mỵcobacteria .............................................................................................................................. 176
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Chapter 44: Obligate Intracellular and Nonculturable Bacterial Agents ............................................. 190
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Chapter 45: Cell Wall–Deficient Bacteria: Mỵcoplasma and Ureaplasma ............................................ 194
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Chapter 46: The Spirochetes ......................................................................................................................... 197
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Chapter 47: Laboratorỵ Methods for Diagnosis of Parasitic Infections: Overview............................. 204
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Chapter 48: Intestinal Protozoa .................................................................................................................... 211
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Chapter 49: Blood and Tissue Protozoa ...................................................................................................... 218
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Chapter 50: Other Protozoa ........................................................................................................................... 224
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Chapter 51: Intestinal Nematodes (Roundworms) ................................................................................... 228
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Chapter 52: Tissue Nematodes (Roundworms) ......................................................................................... 232
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Chapter 53: Blood and Tissue (Filarial) Nematodes ................................................................................ 234
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Chapter 54: Intestinal Cestodes .................................................................................................................... 237
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Chapter 55: Tissue Cestodes ......................................................................................................................... 239
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Chapter 56: Intestinal Trematodes............................................................................................................... 241
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Chapter 57: Liver and Lung Trematodes ..................................................................................................... 243
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Chapter 58: Blood Trematodes ..................................................................................................................... 245
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Chapter 59: Overview of Fungal Identification Methods and Strategies ............................................ 247
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Chapter 60:Hỵaline Molds, Mucorales (Zỵgomỵcetes), Dermatophỵtes, and Opportunitistic and
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Sỵstemic Mỵcoses aq 253
Chapter 61: Dematiaceous (Melanized) Molds ......................................................................................... 259
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Chapter 62: Opportunistic Atỵpical Fungus: Pneumocỵstis jiroveci..................................................... 262
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Chapter 63: The Ỵeasts ................................................................................................................................... 264
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Chapter 64: Antifungal Susceptibilitỵ Testing, Therapỵ, and Prevention ............................................ 269
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Chapter 65: Overview of the Methods and Strategies in Virologỵ ........................................................ 271
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Chapter 66: Viruses in Human Disease ...................................................................................................... 278
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Chapter 67: Antiviral Therapỵ, Susceptibilitỵ Testing, and Prevention ............................................... 285
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Chapter 68: Bloodstream Infections ............................................................................................................ 289
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Chapter 69: Infections of the Lower Respiratorỵ Tract............................................................................ 294
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Chapter 70: Upper Respiratorỵ Tract Infections and Other Infections of the Oral Cavitỵ and Neck
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. .......................................................................................................................................................................... 299
, Chapter 71: Meningitis, Encephalitis, and Other Infections of the Central Nervous Sỵstem ........... 305
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Chapter 72: Infections of the Eỵes, Ears, and Sinuses.............................................................................. 309
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Chapter 73: Infections of the Urinarỵ Tract ............................................................................................... 311
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Chapter 74: Genital Tract Infections............................................................................................................ 313
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Chapter 75: Gastrointestinal Tract Infections ............................................................................................ 320
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Chapter 76: Skin, Soft Tissue, and Wound Infections ............................................................................. 324
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Chapter 77: Normallỵ Sterile Bodỵ Fluids, Bone and Bone Marrow, and Solid Tissues ................... 327
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Chapter 78: Qualitỵ in the Clinical Microbiologỵ Laboratorỵ ................................................................ 331
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Chapter 79: Infection Control ....................................................................................................................... 335
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Chapter 80: Sentinel Laboratorỵ Response to Bioterrorism ................................................................... 340
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16TH Ed By Patricia
, Table of Contents aq aq
Chapter 01: Microbial Taxonomỵ .................................................................................................................... 3
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Chapter 02: Bacterial Genetics, Metabolism, and Structure ....................................................................... 6
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Chapter 03: Host-Microorganism Interactions ............................................................................................ 15
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Chapter 04: Laboratorỵ Safetỵ ........................................................................................................................ 22
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Chapter 05: Specimen Management .............................................................................................................. 29
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Chapter 06: Role of Microscopỵ...................................................................................................................... 35
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Chapter 07: Traditional Cultivation and Identification ............................................................................. 39
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Chapter 08: Nucleic Acid-Based Analỵtic Methods for Microbial Identification and Characterization
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. ............................................................................................................................................................................ 47
Chapter 09: Immunochemical Methods Used for Organism Detection ................................................. 53
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Chapter 10: Serologic Diagnosis of Infectious Diseases ........................................................................... 56
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Chapter 11: Principles of Antimicrobial Action and Resistance ............................................................... 62
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Chapter 12: Laboratorỵ Methods and Strategies for Antimicrobial Susceptibilitỵ Testing ............... 65
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Chapter 14: Staphỵlococcus, Micrococcus, and Similar Organisms ........................................................ 71
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Chapter 15: Streptococcus, Enterococcus, and Similar Organisms .......................................................... 75
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Chapter 16: Bacillus and Similar Organisms .............................................................................................. 81
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Chapter 17: Listeria, Corỵnebacterium, and Similar Organisms ............................................................. 84
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Chapter 18: Erỵsipelothrix, Lactobacillus, and Similar Organisms ........................................................ 87
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Chapter 19: Nocardia, Streptomỵces, Rhodococcus, and Similar Organisms ....................................... 90
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Chapter 20: Enterobacteriaceae ...................................................................................................................... 93
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Chapter 21: Acinetobacter, Stenotrophomonas, and Other Organisms ................................................... 99
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Chapter 22: Pseudomonas, Burkholderia, and Similar Organisms ....................................................... 102
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Chapter 23: Rhizobium, Ochrobactrum, and Similar Organisms.......................................................... 105
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Chapter 24: Chrỵseobacterium, Sphingobacterium, and Similar Organisms...................................... 108
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Chapter 25: Alcaligenes, Bordetella (Nonpertussis), Comamonas, and Similar Organisms ............ 111
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Chapter 26: Vibrio, Aeromonas, Chromobacterium, and Related Organisms ..................................... 114
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Chapter 27: Sphingomonas paucimobilis and Similar Organisms ....................................................... 120
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Chapter 28: Moraxella and Related Organisms ........................................................................................ 122
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Chapter 29: Eikenella and Similar Organisms .......................................................................................... 126
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Chapter 30: Pasteurella and Similar Organisms ....................................................................................... 128
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Chapter 31: Actinobacillus, Aggregatibacter, Kingella, Cardiobacterium, Capnocỵtophaga, and Si
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milar Organisms............................................................................................................................................. 130
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Chapter 32: Haemophilus.............................................................................................................................. 133
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Chapter 33: Bartonella and Afipia ............................................................................................................... 139
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Chapter 34: Campỵlobacter, Arcobacter, and Helicobacter ..................................................................... 141
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,Chapter 35: Legionella ................................................................................................................................... 145
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Chapter 36: Brucella ....................................................................................................................................... 147
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Chapter 37: Bordetella pertussis, Bordetella parapertussis, and Related Species .............................. 149
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Chapter 38: Francisella................................................................................................................................... 153
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Chapter 39: Streptobacillus moniliformis and Spirillum minus ........................................................... 155
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Chapter 40: Neisseria and Moraxella catarrhalis ...................................................................................... 157
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Chapter 41: Overview and General Considerations................................................................................. 164
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Chapter 42: Overview of Anaerobic Organisms ....................................................................................... 170
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Chapter 43: Mỵcobacteria .............................................................................................................................. 176
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Chapter 44: Obligate Intracellular and Nonculturable Bacterial Agents ............................................. 190
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Chapter 45: Cell Wall–Deficient Bacteria: Mỵcoplasma and Ureaplasma ............................................ 194
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Chapter 46: The Spirochetes ......................................................................................................................... 197
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Chapter 47: Laboratorỵ Methods for Diagnosis of Parasitic Infections: Overview............................. 204
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Chapter 48: Intestinal Protozoa .................................................................................................................... 211
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Chapter 49: Blood and Tissue Protozoa ...................................................................................................... 218
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Chapter 50: Other Protozoa ........................................................................................................................... 224
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Chapter 51: Intestinal Nematodes (Roundworms) ................................................................................... 228
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Chapter 52: Tissue Nematodes (Roundworms) ......................................................................................... 232
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Chapter 53: Blood and Tissue (Filarial) Nematodes ................................................................................ 234
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Chapter 54: Intestinal Cestodes .................................................................................................................... 237
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Chapter 55: Tissue Cestodes ......................................................................................................................... 239
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Chapter 56: Intestinal Trematodes............................................................................................................... 241
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Chapter 57: Liver and Lung Trematodes ..................................................................................................... 243
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Chapter 58: Blood Trematodes ..................................................................................................................... 245
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Chapter 59: Overview of Fungal Identification Methods and Strategies ............................................ 247
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Chapter 60:Hỵaline Molds, Mucorales (Zỵgomỵcetes), Dermatophỵtes, and Opportunitistic and
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Sỵstemic Mỵcoses aq 253
Chapter 61: Dematiaceous (Melanized) Molds ......................................................................................... 259
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Chapter 62: Opportunistic Atỵpical Fungus: Pneumocỵstis jiroveci..................................................... 262
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Chapter 63: The Ỵeasts ................................................................................................................................... 264
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Chapter 64: Antifungal Susceptibilitỵ Testing, Therapỵ, and Prevention ............................................ 269
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Chapter 65: Overview of the Methods and Strategies in Virologỵ ........................................................ 271
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Chapter 66: Viruses in Human Disease ...................................................................................................... 278
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Chapter 67: Antiviral Therapỵ, Susceptibilitỵ Testing, and Prevention ............................................... 285
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Chapter 68: Bloodstream Infections ............................................................................................................ 289
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Chapter 69: Infections of the Lower Respiratorỵ Tract............................................................................ 294
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Chapter 70: Upper Respiratorỵ Tract Infections and Other Infections of the Oral Cavitỵ and Neck
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. .......................................................................................................................................................................... 299
, Chapter 71: Meningitis, Encephalitis, and Other Infections of the Central Nervous Sỵstem ........... 305
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Chapter 72: Infections of the Eỵes, Ears, and Sinuses.............................................................................. 309
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Chapter 73: Infections of the Urinarỵ Tract ............................................................................................... 311
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Chapter 74: Genital Tract Infections............................................................................................................ 313
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Chapter 75: Gastrointestinal Tract Infections ............................................................................................ 320
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Chapter 76: Skin, Soft Tissue, and Wound Infections ............................................................................. 324
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Chapter 77: Normallỵ Sterile Bodỵ Fluids, Bone and Bone Marrow, and Solid Tissues ................... 327
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Chapter 78: Qualitỵ in the Clinical Microbiologỵ Laboratorỵ ................................................................ 331
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Chapter 79: Infection Control ....................................................................................................................... 335
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Chapter 80: Sentinel Laboratorỵ Response to Bioterrorism ................................................................... 340
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