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MICR 271 - MODULE 4 Certification Review Exam With Multiple Choices And Answers.

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What type of chromosomes do bacteria contain? - correct answer Circular What direction do circular chromosomes replicate in? - correct answer Bi-directional! What is the oriC? - correct answer The origin, where DNA replication begins. This site is AT-rich and thus is separated easier than G-C regions. What happens once the DNA strands are seperated? - correct answer The replication forks will proceed in opposite directions. This is driven by the replisome, before the two forks meet at the termination site. What is the replisome? - correct answer Complex of multiple proteins involved in replication. How are multiple copies of chromosomes created? - correct answer When additional rounds of replication begin at the oriC before the prior rounds reach the termination site. What are catenated daughter chromosomes? - correct answer Chromosomes that are interlocked. This is the result of circular chromosomes replicating. What is topoisomerase? - correct answer A group of enzymes responsible for managing DNA tangling, unwinding, and winding. They especially help in the decatenation of catenated daughter chromosomes. Name one advantage of having circular chromosomes. - correct answer The chromosomes will not have to worry about free end, or loss of DNA material after each replication round. What is a helicase? - correct answer Appears like a whirling molecular machine, that spins the DNA as fast as a jet engine, and unwinds the double helix into 2 strands. How are strands copied? - correct answer One strand is copied continously, whereas the other strand is copied backwards. The other strand will be drawn out repeatedly in loops and copied one section at a time. Explain the bacterial replication process: - correct answer 1. The helicase will unwind DNA. The lagging strand will be coated with single stranded DNA binding proteins (SSB) proteins. The primase will produce a RNA primer. 2. DNA Pol III holoenzyme will be attached to DNA through a B-clamp. The t clamp loader will load the DNA Pol III into the complex. 3. A core enzyme of Pol III will carry out the replication of the leading strand. 4. Two additional Pol III enzymes will carry out the replication of the lagging strand, and create Okazaki fragments. 5. The core enzymes reach the completed region, and will be released as Okazaki fragments are bound together. DNA Pol I will remove the RNA primer, fill gaps between DNA, and DNA ligase will join all strands. What do single stranded DNA binding proteins do? - correct answer It has protective functions! What is a holoenzyme? - correct answer Apoenzyme + cofactor (coenzyme), in active form. What is a core enzyme? - correct answer Subunits of an enzyme that are required for catalytic activity. Explain the eukaryotic replication process: - correct answer 1. To activate the helicase and the unwinding of the DNA, the helicase is complexed with additional proteins. Single stranded DNA will be protected by the replication protein A. 2. Helicase will associate indirectly with primase (Pol ∞) to synthesize RNA primer. 3. Polymerase (Pol Ɛ) will be responsible for the creation of the leading strand. Pol 8 will be responsible for the creation of the lagging strand. Proliferating cell nuclear antigen (PCNA) load these polymerases into the DNA, and a replication factor C will carry this to DNA. 4. Okazaki fragments are shorter in eukaryotes. RNA primer will be removed by strand displacement, filled in by Pol 8, and DNA ligase will repair gaps in strands. Do replication forks work faster in humans or prokaryotes? - correct answer Prokaryotes! This may be because eukaryotes did not have selective pressures to adapt + create faster replication forks. What 2 factors slowing down replication forks in prokaryotes? - correct answer 1. Subject to cell cycle-dependent regulation of replication initiation and termination + must deal with displacing nucleosomes during replication. 2. Many enzymes within the eukaryotic replisome are subject to post-translational modifications that can inactivate or activation. What is proofreding? - correct answer A 3'-5' exonuclease process where DNA polymerases use their enzymatic activity to repair replication errors. This may be done by reversing, excising incorrect bases, and inserting correct bases. What are repair only polymerases? - correct answer Polymerases that only engage in repair, duh. This is very important especially at the replication fork to repair breaks in dsDNA if forks stop running. Explain the differences between prokaryotic and eukaryotic initiation sites and base pairs. - correct answer Eukaryotic organisms have many initiation sites that are relatively close, and have 3000 million base pairs. In contrast, bacteria like E.coli have 1 initiation site and 4.6 million base pairs. What is translesion DNA repair? - correct answer Insert bases opposite damaged nucleotides or repair double strand pairs.

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Institution
MICR 271
Course
MICR 271

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MICR 271 Module 6

Who developed innovate laboratory glassware and experimental methods that conducted to the young
field of bacteriology in the late 19th century? - correct answer Louis Pasteur



1861 - The Pasteur Effect - correct answer -introduces terms aerobic and anaerobic

-observes that alcohol was produced in absence of oxygen when sugar is fermented



1880 - Attenuated Vaccines - correct answer -Pasteur develops a method of
attenuating a virulent pathogen, so it would immunize and not cause disease

-conceptual breakthrough for establishing protection against disease by inoculation of a a weakened
strain of causative agent



1890 - Bacterial Nitrification - correct answer -Windogradsky succeeds in isolating
nitrifying bacteria from soil and preforms major definitive work on organisms responsible for process of
nitrification in nature



1897 - Yeast Fementation - correct answer -Buchner publishes first evidence of a
cell-free fermentation process using extracts isolated from yeast

-this discovery refutes Pasteur's claim that fermentation requires presence of live cells



1901 - Growth Factors - correct answer -water-soluble compound of yeast, later
found to be a B vitamin that is required for the growth of yeast



1905 - Chemicals Produced by Bacteria - correct answer -aerobic bacilli isolated —>
produces acetone, ethanol, and acetic acid



1906 - Energy and Carbon Sources - correct answer -groundbreaking work on
methane-using and methane-producing bacteria

-first proof that methane can serve as an energy and carbon source

,1924 - Oxidation, Fermentation, and Biosynthesis - correct answer -points out that
life on earth would not be possible without microbes



1928 - Bacterial Transformation - correct answer -Griffith discovers transformation
in bacteria and establishes the foundation of molecular genetics



1944 - DNA role in Bacterial Transformation - correct answer -shows that DNA is the
transforming material in cells



1957 - Microbial Production of Amino Acids - correct answer -discovers that
bacteria can be used to produce monosodium glutamate

-leads to a new industry



1967 - Understanding Synthesis of Proteins Through Translation - correct answer -
proposed the existence of transfer RNA that uses a three base code and mediates in the synthesis of
proteins

-triplet nature of genetic code was first found in T4 phage



1965 - Molecular Systematics - correct answer -Pauling unlocked the key to the field
of nucleic acid-based identification of microorganisms by intro of the concept of molecular systematics
using proteins and nucleic acids



1966 - Genetic Control - correct answer -realization that chromosomes could be
redesigned and genes moved



1967 - Thermophile Bacterium Machinery - correct answer -Brock identifies a
thermophile bacterium from which heat stable DNA polymerase is later isolated and used in PCR



1970 - Restriction Enzymes & Reverse Transciptase - correct answer -Smith &
Wilcox describe the action of restriction enzymes which quickly becomes tools for sizing DNA

-Howard Temin & David Baltimore independently discover reverse transcriptase in RNA viruses

, 1973 - Recombinant DNA - correct answer -if DNA is broken into fragments &
combined w/ plasmid DNA, such recombinant DNA molecules will reproduce if inserted into bacterial
cells



1977 - Sequencing DNA - correct answer -Gilbert uses technique to determine the
sequence of an operon in a bacterial genome

-Sanger use the technique to determine the sequence of all 5375 nucelotides of phage phi-X174



1988 - PCR Technology - correct answer -heat stable DNA polymerase from
Thermus aquaticus to establish PCR technology



Key discovery: Virulent pathogens can be attenuated

Scientific significance? - correct answer conceptual breakthrough for the
development of vaccines



Key discovery: Isolation of aerobic bacilli

Scientific significance? - correct answer used for the production of important
industrial chemicals



Key discovery: Transformation discovered in bacteria

Scientific significance? - correct answer helped form the basis of molecular genetics



Key discovery: Discovery of a three-base code in T4 bacteriophage

Scientific significance? - correct answer all forms of life use this principle to mediate
protein syntheis



Key discovery: Lac region of E.coli was transported into another organism

Scientific significance? - correct answer realized chromosomes can be redesigned
and genes moved



Key discovery: Identification of Thermus aquaticus

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