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Summary Neurobiology DT2 - Memory, Emotion, Sleep & Higher Brain Functions + Practice Exam(UU Biology)

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Comprehensive study guide for Neurobiology covering memory systems, emotional processing, sex differences in the brain, sleep physiology, and complex cortical functions. Based on lectures, tutorials, learning goals, and self‑assessment questions. Includes clear explanations of declarative and non‑declarative memory, hippocampal circuits, engrams, amygdala pathways, reward systems, hormonal influences on brain development, circadian rhythms, sleep stages, and EEG patterns. Structured for clarity and optimized for efficient exam preparation.

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Lecture: Memory

Learning goal: You can reproduce and apply the general taxonomy of memory systems (classification into different forms and timeline of
processing).

Answer:

Timeline of processing:

• Sensory memory: Very brief storage (milliseconds to seconds); high capacity but rapidly decays.
• Working memory: Limited capacity (~7 items), short duration (seconds); active manipulation of information.
• Long-term memory: Unlimited capacity and long duration; relatively stable over time.

Flow: Sensory input → sensory memory → (attention) → working memory → (encoding/consolidation) → long-term memory

Types of long-term memory:

• Declarative (explicit):
o Semantic memory (facts, concepts; not tied to specific events)
o Episodic memory (events, time and place-specific) → Mediated by the medial temporal lobe (including hippocampus)

• Non-declarative (implicit):
o Procedural memory (skills/habits): striatum, motor cortex, cerebellum
o Priming: sensory neocortex
o Classical/operant conditioning: amygdala, cerebellum
o Non-associative learning (habituation, sensitization): reflex pathways


Learning goal: You can describe the processes of memory (e.g. encoding, consolidation and retrieval)

Answer:

• Encoding: Transfer of attended sensory input into a memory trace; involves linking new info to existing knowledge.
→ Hippocampus and medial temporal lobe active during successful encoding.

• Storage: Maintenance of memory traces over time in neural circuits.
→ Long-term storage believed to shift from hippocampus to distributed cortical areas.

• Consolidation: Stabilizing memory traces; occurs at:
o Synaptic level: Minutes to hours; involves LTP (e.g. CA1 in hippocampus)
o Systems level: Days to years; involves reorganization of brain regions (e.g. hippocampus to cortex shift)

• Retrieval: Accessing stored information. → Involves hippocampus for recent memories and cortex for older ones.
• Reconsolidation: Retrieved memories become labile again and must be re-stabilized.


Learning goal: You can reproduce how memory can be affected after damage to the medial temporal lobe.

Answer:

Patient H.M. (bilateral hippocampal lesions):

• Severe anterograde amnesia (can’t form new declarative memories)
• Mild retrograde amnesia (difficulty retrieving recent memories)

Patient K.F. (left parietal damage):

• Impaired working memory but preserved long-term memory → Shows a double dissociation between working and long-term memory.


Learning goal: You can reproduce the input and output areas of the hippocampus, as well as the subareas and connections in the hippocampus.

Answer:

• Input: From neocortex, including multimodal sensory and spatial information.
• Pathway through hippocampus: Entorhinal cortex → Dentate Gyrus → CA3 → CA1
• Output: Via fornix to cortical and subcortical areas.




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, Learning goal: You can explain the role of the cortex and hippocampus in encoding, storage and retrieval.

Answer:

Hippocampus:

• Critical for encoding and retrieval of new episodic memories
• Plays a temporary role in memory storage (see standard consolidation theory)

Neocortex:

• Long-term storage of consolidated memories
• Involved in semantic memory and remote episodic memory
• Role in priming and skill learning


Learning goal: You can explain standard consolidation theory and knows what observations and results support standard consolidation theory.

Answer:

Theory:

• Hippocampus initially binds elements of a memory
• Over time, through replay, retrieval, and emotional tagging, memories become independent of the hippocampus and stored in cortex.

Supporting observations:

• H.M.: Temporal gradient in retrograde amnesia → older memories more intact than recent ones.
• Fear conditioning in rats:
o Removal of hippocampus shortly after learning → impaired freezing
o Removal after 14 or 28 days → freezing intact → memory had consolidated in cortex


Learning goal: You can describe the properties of the cells we use for orientation in space and navigation.

Answer: All these together form a cognitive map used for spatial memory and navigation (O’Keefe & Moser)

• Place cells (hippocampus): Fire when in a specific location (place field) → Discovered by John O'Keefe
• Grid cells (entorhinal cortex): Fire in a hexagonal grid pattern across space
• Head direction cells: Fire when head is facing a specific direction
• Boundary cells: Fire in relation to environmental boundaries
• Speed cells: Firing rate correlates with movement speed


Learning goal: You can describe the discussed forms of non-declarative memory.

Answer:

• Habituation: Decreased response to repeated stimulus (e.g. ignoring a ticking clock)
• Sensitization: Increased response to repeated stimulus (e.g. louder response to a repeated loud noise)
• Priming: Faster or more accurate response to a stimulus due to prior exposure (unconscious)

• Classical conditioning: Association between two stimuli (e.g. bell → food → salivation)
• Operant conditioning: Behavior shaped by reinforcement or punishment
• Procedural memory: Skills and habits (e.g. riding a bike)


Learning goal: You can reproduce brain regions are involved in the different forms of non-declarative memory

Answer:

Form of Memory: Brain Region(s):

Habituation/Sensitization Reflex pathways

Priming Neocortex (sensory-specific areas)

Procedural (skills) Basal ganglia, motor cortex, cerebellum

Classical Conditioning Cerebellum (skeletal responses), Amygdala (emotional responses)

Operant Conditioning Striatum (for habits), frontal cortex



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High-quality, structured study notes for the Bachelor Biology programme at Utrecht University. Focused on clear, exam-oriented summaries of first-year, second-year, and third-year courses, with a specialisation in cellular biology, developmental biology, and neuroscience. These notes are designed to simplify complex biological concepts into well-structured, high-yield summaries to support efficient and effective exam preparation.

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