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Full Summary - Laboratory Animal Science (Rodents)

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Taught by D. Van Dam and C. Van Ginniken. This document contains the complete summary of the course ‘Laboratory Animal Science - Rodents’. This is an optional course in the 2nd Master year of the study Biomedical Science at the UA.

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LABORATORY
ANIMAL SCIENCE
(LAS) - RODENTS




UAntwerpen

,TABLE OF CONTENTS

CH 0: INTRODUCTION ..............................................................................................................5

CH1: LEGISLATION (C. VAN GINNIKEN) ..................................................................................6

1. LEGISLATION ON WORKING WITH LABORATORY ANIMALS ...................................................................... 6
2. LABORATORY ANIMAL – DEFINITION ............................................................................................... 8
3. LABORATORY ANIMAL – ORIGIN ..................................................................................................... 8
4. LABORATORY ANIMAL – IDENTIFICATION ........................................................................................ 10
5. ANIMAL EXPERIMENT – PURPOSES ............................................................................................... 11
6. ETHICAL COMMITTEE ............................................................................................................... 12
7. ANIMAL WELFARE UNIT/BODY ..................................................................................................... 13
8. USER, SUPPLIER, BREEDER ........................................................................................................ 13
9. ANIMAL HUSBANDRY ............................................................................................................... 14
10. PERSONNEL AND THEIR RESPONSABILITIES (!) ................................................................................. 15
11. AT THE END OF THE EXPERIMENT – OUTCOMES ................................................................................ 17


CH2: PRINCIPLES OF ANIMAL HANDLING AND RESTRAINT (D. VAN DAM) .............................. 19

1. THE 3HS-MODULES ................................................................................................................ 19
2. ANIMAL HANDLING ................................................................................................................. 19
3. NON-AVERSIVE / REFINED HANDLING OF MICE ................................................................................ 21
4. RAT HANDLING / TOUCHING ...................................................................................................... 25
5. PICKING UP ANIMALS ............................................................................................................... 27
6. IMMOBILISATION OF ANIMALS..................................................................................................... 28


CH3: BIOLOGY OF RODENTS (C. VAN GINNIKEN) .................................................................. 33

1. MOUSE – NUMBERS (BELGIUM / FLANDERS) ................................................................................... 33
2. MOUSE – BIOLOGY ................................................................................................................. 33
3. ANIMAL HUSBANDRY CONSIDERATIONS (GENERAL) ........................................................................ 36
4. MOUSE HUSBANDRY............................................................................................................... 37
5. MOUSE – ENVIRONMENTAL PARAMETERS ..................................................................................... 41
6. MOUSE – ANATOMICAL & PHYSIOLOGICAL FEATURES ...................................................................... 42
7. MOUSE – NUTRITION & REPRODUCTION ...................................................................................... 46
8. MOUSE – REPRODUCTIVE AND URINARY SYSTEM ............................................................................. 47
9. MOUSE – FERTILITY CYCLE, BREEDING & REPRODUCTION ................................................................ 48
10. MOUSE – DEVELOPMENT & BREEDING PROTOCOLS ........................................................................ 51
11. RAT – NUMBERS .................................................................................................................... 54
12. RAT – BIOLOGY...................................................................................................................... 54
13. RAT – HUSBANDRY ................................................................................................................. 55
14. RAT – ENVIRONMENTAL PARAMETERS, ANATOMY & REPRODUCTION .................................................... 56

1

,15. RAT – BREEDING & REPRODUCTION ............................................................................................ 57


CH4: ANIMAL WELFARE (D. VAN DAM) .................................................................................. 59

1. IMPACT ON ANIMAL WELFARE IN RESEARCH .................................................................................. 59
2. ANIMAL WELFARE AND SENTIENCE ............................................................................................. 60
3. CONTROLLABILITY AND PREDICTABILITY ........................................................................................ 64
4. FREQUENCY OF STRESSORS & HABITUATION .................................................................................. 66
5. REGULATORY RANGE & ADAPTIVE CAPACITY ................................................................................. 67
6. STRESS, DISTRESS & ANIMAL WELFARE ....................................................................................... 68
7. HABITUATION VS. SENSITIZATION................................................................................................ 69
8. STRESS THROUGHOUT THE LIFE CYCLE (EXAMPLES) ........................................................................ 69

CH5: BEHAVIORAL EVALUATION (VAN DAM) ......................................................................... 75

1. GOAL OF BEHAVIORAL EVALUATION ............................................................................................ 75
2. MULTI-TIERED EVALUATION PROCESS ......................................................................................... 75
3. TIER 1: GENERAL HEALTH AND NEUROLOGICAL REFLEXES (DETAILS) ................................................... 76
4. SENSORY AND MOTOR ABILITIES ................................................................................................ 81
5. SPECIFIC BEHAVIORAL DOMAINS (3RD TIER): SOCIAL BEHAVIORS ....................................................... 87
6. FEAR AND ANXIETY ................................................................................................................. 91
7. CIRCADIAN RHYTHM AND SLEEP ................................................................................................ 92
8. LEARNING AND MEMORY (COGNITIVE FUNCTION TESTS) .................................................................. 93
9. DEPRESSION-RELATED SYMPTOMS ............................................................................................. 97

CH6: MINIMALLY INVASIVE PROCEDURES (C. VAN GINNIKEN) .............................................. 98

1. IDENTIFICATION / MARKING OF ANIMALS ....................................................................................... 98
2. ADMINISTRATION OF SUBSTANCES............................................................................................. 103
3. COLLECTION OF BODY FLUIDS .................................................................................................. 108


CH7: ANESTHESIA AND ANALGESIA (C. VAN GINNEKEN) .................................................... 117

1. PRE-OPERATIVE MANAGEMENT ................................................................................................ 117
2. PRE-OPERATIVE: FASTING ...................................................................................................... 120
3. PERI-OPERATIVE PERIOD – MANAGEMENT................................................................................... 122
4. DEFINITIONS ....................................................................................................................... 123
5. ANESTHESIA ....................................................................................................................... 124
6. THE TRIAD OF ANESTHESIA ..................................................................................................... 124
7. ANESTHESIA – PHASES .......................................................................................................... 125
8. ANESTHETIC DEPTH .............................................................................................................. 125
9. INHALATION ANESTHETICS...................................................................................................... 127
10. INJECTABLE ANAESTHETICS ..................................................................................................... 132
11. ANAESTHESIA – PHARMACA .................................................................................................... 137
2

,12. OBSERVATIONAL MONITORING DURING ANAESTHESIA ..................................................................... 138
13. TROUBLESHOOTING .............................................................................................................. 139
14. POST-OPERATIVE MANAGEMENT ............................................................................................... 140
15. PAIN & ANALGESIA ............................................................................................................... 141
16. PRE-EMPTIVE ANALGESIA ....................................................................................................... 141
17. PAIN MANAGEMENT – ANALGESICS ........................................................................................... 142
18. PAIN ASSESSMENT ............................................................................................................... 144

CH8: PAIN AND WELFARE ASSESSMENT (D. VAN DAM) ....................................................... 146

1. PAIN AND WELFARE ASSESSMENT ............................................................................................ 146
2. WELFARE ASSESSMENT ......................................................................................................... 146
3. WELFARE INDICATORS........................................................................................................... 146
4. TUTORIAL: ANIMAL HEALTH AND WELFARE (AHWLA) ................................................................... 147
5. BODY CONDITION ................................................................................................................ 147
6. BODY SHAPE AND MALFORMATIONS ......................................................................................... 148
7. POSTURE ........................................................................................................................... 149
8. FUR QUALITY ...................................................................................................................... 150
9. EYES AND MOUTH ................................................................................................................ 150
10. SKIN AND MUCOUS MEMBRANES ............................................................................................. 151
11. TAIL .................................................................................................................................. 152
12. BEHAVIOURAL ASPECTS ......................................................................................................... 152
13. PAIN ASSESSMENT ............................................................................................................... 154
14. GRIMACE SCALE (FACIAL EXPRESSION ANALYSIS)......................................................................... 159
15. ESSENTIAL KNOWLEDGE FOR WELFARE ASSESSMENT .................................................................... 161
16. WELFARE ASSESSMENT IN GENETICALLY MODIFIED (GM) RODENTS .................................................. 162

CH9: HUMANE KILLING ........................................................................................................ 164

1. LEGISLATION ON HUMANE KILLING ........................................................................................... 164
2. REQUIREMENTS FOR HUMANE KILLING ...................................................................................... 164
3. METHODS FOR HUMANE KILLING (EXAM) ................................................................................. 164
4. CONFIRMATION OF DEATH...................................................................................................... 167
5. HUMANE ENDPOINTS ............................................................................................................ 167

CH10: DISEASES (C. VAN GINNEKEN) ............................................................................... 168

1. HOW MICROORGANISMS ENTER THE ANIMAL UNIT ......................................................................... 168
2. HEALTH MONITORING (HM) ................................................................................................... 169
3. MAJOR DISEASE PROBLEMS .................................................................................................... 171
4. DISEASES IN LABORATORY MICE .............................................................................................. 172
5. KEY TAKEAWAYS LABORATORY MOUSE DISEASES............................................................................ 176
6. DISEASES IN LABORATORY RATS ............................................................................................... 176
7. RESPONSE PLAN (FOR ANY DISEASE OUTBREAK) ........................................................................... 180
3

,CH11: RODENTS FIELD RESEARCH (H. LEIRS) .................................................................... 181

1. CAPTURE METHODS ............................................................................................................. 181
2. TRAPPING EFFORT ................................................................................................................ 183
3. MARKING RODENTS .............................................................................................................. 184
4. SAMPLE COLLECTION............................................................................................................ 185
5. HUMANE KILLING ................................................................................................................. 186
6. BIOSAFETY ......................................................................................................................... 187
7. STUDYING BEHAVIOUR IN NATURE ............................................................................................ 188
8. LEGISLATION....................................................................................................................... 189
9. PUBLIC VISIBILITY................................................................................................................. 189
10. ALTERNATIVE METHODS WITHOUT RODENT MANIPULATION ............................................................ 190




4

,CH 0: INTRODUCTION


This summary covers the full theoretical content of the course Laboratory Animal Science (LAS) –
Rodents. All lecture material has been processed and integrated, including detailed notes taken
during the classes. In addition, new chapters that must be studied independently are included, such
as CH11: Rodents in Field Research.

Throughout the summary, exam tips are clearly indicated, and a distinction is made between material
that is essential and content that is of lesser importance.

The exam consists of approximately 10-15 open-ended questions.

Good luck!




5

,CH1: LEGISLATION (C . V A N G IN N IK E N )

1. LEGISLATION ON WORKING WITH LABORATORY ANIMALS


This chapter is revision from the core module (1st master) à not important for the exam!

EUROPEAN LEVEL

• EU Directive 1986
o 1st directive on protection of animals used for experimental & other scientific purposes.
o Required all EU Member States to implement it into their national legislation.
o Belgium implemented it through its Animal Welfare Law (1986) and Royal Decree
(1993).

• EU Directive 2010
o Updated and replaced Directive 1986
o Strengthened protection for animals used in science.
o Key improvements:
§ Clearer rules on the 3Rs (Replacement, Reduction, Refinement).
§ Stricter project authorization requirements.
§ Increased transparency and reporting.
o Required Belgium (and other EU Member States) to update national laws accordingly.


NATIONAL LEVEL (BELGIUM)

• Animal Welfare Law (1986)
o Foundation for all animal welfare legislation in Belgium.
o Protects the welfare of animals in general — not spec. targeted at laboratory animals


• Royal Decree (RD) 1993
o Specifically addressed the protection of laboratory animals.
o Implemented the EU directive 1986


• Royal Decree (RD) 2013
o Replaced the 1993 RD to implement changes from EU Directive 2010
o Includes annexes with detailed husbandry and care requirements (important for
practical assignments)

• Royal Decree (RD) 2001
o Prohibits certain types of animal experiments
§ Tobacco (research).
§ Cosmetics (except in vivo acute toxicity tests).
§ Monoclonal antibodies using the ascites method (exemptions may be possible




6

, • Decrees in 2017
o Changes related to laboratory animal protection.
o Defines the composition of the Vlaamse Proefdierencommissie (Flemish Animal
Experiment Commission).

REGIONAL LEVEL (FLANDERS & WALLONIA)

• 2017 – Competences for welfare became regional matter (Flanders & Wallonia responsible).
• Vlaamse Codex Dierenwelzijn 2024
o New Flemish Animal Welfare Code, eiective 1 January 2025.
o Updates and consolidates the 1986 Animal Welfare Law.
o Important future measures:
§ From 2026: Ban on selling animals at markets.
§ From 2029: Mandatory shelters for animals kept outdoors (e.g., horses).


CONSTITUTIONAL LEVEL (BELGIUM)

• Belgian Constitution – 2024 Amendment
o Oiicially recognizes animals as sentient beings.
o States that their welfare must be protected.
o All laws, decrees, and regulations must comply with this constitutional principle.


SCOPE OF PROTECTION

• Applies to vertebrates (unless specifically excluded).
• Protection focuses on:
o Welfare, health, and proper housing conditions.
o Minimizing pain, suiering, and distress.
o Promoting alternatives (3Rs).




7

,2. LABORATORY ANIMAL – DEFINITION


According to the 1986 Animal Welfare Law, laboratory animals include:

• All vertebrates and cephalopods (e.g., octopuses and squids), as these animals can suier.
• Developmental stage:
o Vertebrates: From the last trimester of normal development onward
§ (e.g., mouse embryos become laboratory animals after 14 days of gestation
since their total pregnancy is 21 days) (know the gestation period of the rodents seen in this course)
§ Specifications for fish: considered independently feeding when both ends of the
intestines are open, and the fish takes in food
§ Specifications for birds: when they hatch or are born alive (whether by human
action or not) they are considered experimental animals
o Vertebrates without gestation (e.g., larval zebrafish): considered a laboratory animal
once it becomes self-feeding (e.g. larval zebrafish starting from 72h are lab animals).

When you start using the animal before the last trimester, however the handling exceeds the third
trimester à the animal IS considered a laboratory animal!!

Royal Decree 2001 (RD2001) – Ban on Great Ape Experiments
• No animal experiments allowed on: Chimpanzees, Bonobos, Orangutans, Gorillas.
• Keep in mind: any kind of handling on great apes à Not an animal experiment à simply illegal!


3. LABORATORY ANIMAL – ORIGIN


PURPOSE-BRED ANIMALS

• Certain species must be purpose-bred for scientific use (come from licensed breeding
companies)
1. Rodents: Mouse, Rat, Guinea Pig, Syrian Hamster, Chinese Hamster, Mongolian Gerbil
2. Larger Mammals: Rabbit, Dog, Cat
3. All species of non-Human Primates (NHPs) (F2 generation!)
§ F1 generation should also be purpose bred
§ Grandparents may be caught in the wild (not common)
4. Other species: Frog, Zebrafish

• Why purpose-bred animals?
o Known genetic, biological, and behavioral background à Increases standardization.
o Improves quality and reliability of results.
o Reduces variability à ­statistical power à ¯procedures & animal use.




8

, • Exemptions:
o If purpose-bred animals are unavailable, researchers must:
§ Prove insuiicient supply from licensed breeders.
§ Ensure animals were bred in good conditions/circumstances
§ Obtain government approval.


USE OF NON-HUMAN PRIMATES (NHPs)

• NHPs can only be used if absolutely necessary (essential for the benefit of humans) and no
other methods (nor alternative animal species) are yet available.

• Allowed only for:
1. Basic research.
2. Applied research (only for human diseases and disorders).
3. Drug and treatment development (including safety studies).

• Not allowed for:
o Protection or conservation of species.
o Education.
o Forensic research.


USE OF NON-PURPOSE-BRED ANIMALS

• If a species is not listed as purpose-bred (see above), researchers can source them elsewhere,
but should:
o Prefer licensed breeders (ensures good housing, quality, and reduces variability).
o Farm animals are an exception (since most farmers lack a license).


SPECIAL CASES

• Endangered Species
o Generally not allowed, but exemptions exist if:
§ The research directly benefits the species itself.
§ No alternative species or method is available.
§ Used only for basic/applied research, drug development, or species
preservation.

• Wild-Caught Animals
o Allowed only with a government license.
o Researchers must prove no alternative species or method exists.
o Must be caught by a competent person




9

Table of contents

  1. 01 CH 0: INTRODUCTION 5
  2. 02 CH1: LEGISLATION (C. VAN GINNIKEN) 6
  3. 03 LEGISLATION ON WORKING WITH LABORATORY ANIMALS 6
  4. 04 LABORATORY ANIMAL – DEFINITION 8
  5. 05 LABORATORY ANIMAL – ORIGIN 8
  6. 06 LABORATORY ANIMAL – IDENTIFICATION 10
  7. 07 ANIMAL EXPERIMENT – PURPOSES 11
  8. 08 ETHICAL COMMITTEE 12
  9. 09 ANIMAL WELFARE UNIT/BODY 13
  10. 10 USER, SUPPLIER, BREEDER 13
  11. 11 ANIMAL HUSBANDRY 14
  12. 12 PERSONNEL AND THEIR RESPONSABILITIES (!) 15
  13. 13 AT THE END OF THE EXPERIMENT – OUTCOMES 17
  14. 14 CH2: PRINCIPLES OF ANIMAL HANDLING AND RESTRAINT (D. VAN DAM) 19
  15. 15 THE 3HS-MODULES 19
  16. 16 ANIMAL HANDLING 19
  17. 17 NON-AVERSIVE / REFINED HANDLING OF MICE 21
  18. 18 RAT HANDLING / TOUCHING 25
  19. 19 PICKING UP ANIMALS 27
  20. 20 IMMOBILISATION OF ANIMALS 28
  21. 21 CH3: BIOLOGY OF RODENTS (C. VAN GINNIKEN) 33
  22. 22 MOUSE – NUMBERS (BELGIUM / FLANDERS) 33
  23. 23 MOUSE – BIOLOGY 33
  24. 24 ANIMAL HUSBANDRY CONSIDERATIONS (GENERAL) 36
  25. 25 MOUSE HUSBANDRY 37
  26. 26 MOUSE – ENVIRONMENTAL PARAMETERS 41
  27. 27 MOUSE – ANATOMICAL & PHYSIOLOGICAL FEATURES 42
  28. 28 MOUSE – NUTRITION & REPRODUCTION 46
  29. 29 MOUSE – REPRODUCTIVE AND URINARY SYSTEM 47
  30. 30 MOUSE – FERTILITY CYCLE, BREEDING & REPRODUCTION 48
  31. 31 MOUSE – DEVELOPMENT & BREEDING PROTOCOLS 51
  32. 32 RAT – NUMBERS 54
  33. 33 RAT – BIOLOGY 54
  34. 34 RAT – HUSBANDRY 55
  35. 35 RAT – ENVIRONMENTAL PARAMETERS, ANATOMY & REPRODUCTION 56
  36. 36 RAT – BREEDING & REPRODUCTION 57
  37. 37 CH4: ANIMAL WELFARE (D. VAN DAM) 59
  38. 38 IMPACT ON ANIMAL WELFARE IN RESEARCH 59
  39. 39 ANIMAL WELFARE AND SENTIENCE 60
  40. 40 CONTROLLABILITY AND PREDICTABILITY 64
  41. 41 FREQUENCY OF STRESSORS & HABITUATION 66
  42. 42 REGULATORY RANGE & ADAPTIVE CAPACITY 67
  43. 43 STRESS, DISTRESS & ANIMAL WELFARE 68
  44. 44 HABITUATION VS. SENSITIZATION 69
  45. 45 STRESS THROUGHOUT THE LIFE CYCLE (EXAMPLES) 69
  46. 46 CH5: BEHAVIORAL EVALUATION (VAN DAM) 75
  47. 47 GOAL OF BEHAVIORAL EVALUATION 75
  48. 48 MULTI-TIERED EVALUATION PROCESS 75
  49. 49 TIER 1: GENERAL HEALTH AND NEUROLOGICAL REFLEXES (DETAILS) 76
  50. 50 SENSORY AND MOTOR ABILITIES 81
  51. 51 SPECIFIC BEHAVIORAL DOMAINS (3RD TIER): SOCIAL BEHAVIORS 87
  52. 52 FEAR AND ANXIETY 91
  53. 53 CIRCADIAN RHYTHM AND SLEEP 92
  54. 54 LEARNING AND MEMORY (COGNITIVE FUNCTION TESTS) 93
  55. 55 DEPRESSION-RELATED SYMPTOMS 97
  56. 56 CH6: MINIMALLY INVASIVE PROCEDURES (C. VAN GINNIKEN) 98
  57. 57 IDENTIFICATION / MARKING OF ANIMALS 98
  58. 58 ADMINISTRATION OF SUBSTANCES 103
  59. 59 COLLECTION OF BODY FLUIDS 108
  60. 60 CH7: ANESTHESIA AND ANALGESIA (C. VAN GINNEKEN) 117
  61. 61 PRE-OPERATIVE MANAGEMENT 117
  62. 62 PRE-OPERATIVE: FASTING 120
  63. 63 PERI-OPERATIVE PERIOD – MANAGEMENT 122
  64. 64 DEFINITIONS 123
  65. 65 ANESTHESIA 124
  66. 66 THE TRIAD OF ANESTHESIA 124
  67. 67 ANESTHESIA – PHASES 125
  68. 68 ANESTHETIC DEPTH 125
  69. 69 INHALATION ANESTHETICS 127
  70. 70 INJECTABLE ANAESTHETICS 132
  71. 71 ANAESTHESIA – PHARMACA 137
  72. 72 OBSERVATIONAL MONITORING DURING ANAESTHESIA 138
  73. 73 TROUBLESHOOTING 139
  74. 74 POST-OPERATIVE MANAGEMENT 140
  75. 75 PAIN & ANALGESIA 141
  76. 76 PRE-EMPTIVE ANALGESIA 141
  77. 77 PAIN MANAGEMENT – ANALGESICS 142
  78. 78 PAIN ASSESSMENT 144
  79. 79 CH8: PAIN AND WELFARE ASSESSMENT (D. VAN DAM) 146
  80. 80 PAIN AND WELFARE ASSESSMENT 146
  81. 81 WELFARE ASSESSMENT 146
  82. 82 WELFARE INDICATORS 146
  83. 83 TUTORIAL: ANIMAL HEALTH AND WELFARE (AHWLA) 147
  84. 84 BODY CONDITION 147
  85. 85 BODY SHAPE AND MALFORMATIONS 148
  86. 86 POSTURE 149
  87. 87 FUR QUALITY 150
  88. 88 EYES AND MOUTH 150
  89. 89 SKIN AND MUCOUS MEMBRANES 151
  90. 90 TAIL 152
  91. 91 BEHAVIOURAL ASPECTS 152
  92. 92 PAIN ASSESSMENT 154
  93. 93 GRIMACE SCALE (FACIAL EXPRESSION ANALYSIS) 159
  94. 94 ESSENTIAL KNOWLEDGE FOR WELFARE ASSESSMENT 161
  95. 95 WELFARE ASSESSMENT IN GENETICALLY MODIFIED (GM) RODENTS 162
  96. 96 CH9: HUMANE KILLING 164
  97. 97 LEGISLATION ON HUMANE KILLING 164
  98. 98 REQUIREMENTS FOR HUMANE KILLING 164
  99. 99 METHODS FOR HUMANE KILLING (EXAM) 164
  100. 100 CONFIRMATION OF DEATH 167
  101. 101 HUMANE ENDPOINTS 167
  102. 102 CH10: DISEASES (C. VAN GINNEKEN) 168
  103. 103 HOW MICROORGANISMS ENTER THE ANIMAL UNIT 168
  104. 104 HEALTH MONITORING (HM) 169
  105. 105 MAJOR DISEASE PROBLEMS 171
  106. 106 DISEASES IN LABORATORY MICE 172
  107. 107 KEY TAKEAWAYS LABORATORY MOUSE DISEASES 176
  108. 108 DISEASES IN LABORATORY RATS 176
  109. 109 RESPONSE PLAN (FOR ANY DISEASE OUTBREAK) 180
  110. 110 CH11: RODENTS FIELD RESEARCH (H. LEIRS) 181
  111. 111 CAPTURE METHODS 181
  112. 112 TRAPPING EFFORT 183
  113. 113 MARKING RODENTS 184
  114. 114 SAMPLE COLLECTION 185
  115. 115 HUMANE KILLING 186
  116. 116 BIOSAFETY 187
  117. 117 STUDYING BEHAVIOUR IN NATURE 188
  118. 118 LEGISLATION 189
  119. 119 PUBLIC VISIBILITY 189
  120. 120 ALTERNATIVE METHODS WITHOUT RODENT MANIPULATION 190
  121. 121 Good luck! 6
  122. 122 Monoclonal antibodies using the ascites method (exemptions may be possible 7
  123. 123 o Promoting alternatives (3Rs) 8
  124. 124 o Reduces variability à ­statistical power à ¯procedures & animal use 9

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