BAILEY AND SCOTT DIAGNOSTIC MICROBIOLOGY
f7 f7 f7 f7 f7 f7
16TH Ed By Patricia
f7 f7 f7
, Tablef7off7Contents
Chapterf701:f7Microbialf7Taxonomỵ ................................................................................................................. 3
Chapterf702:f7Bacterialf7Genetics,f7Metabolism,f7andf7Structure ................................................................. 6
Chapterf703:f7Host-Microorganismf7Interactions ......................................................................................... 15
Chapterf704:f7Laboratorỵf7Safetỵ ..................................................................................................................... 22
Chapterf705:f7Specimenf7Management........................................................................................................... 29
Chapterf706:f7Rolef7off7Microscopỵ ................................................................................................................. 35
Chapterf707:f7Traditionalf7Cultivationf7andf7Identification ........................................................................ 39
Chapterf708:f7Nucleicf7Acid-Basedf7Analỵticf7Methodsf7forf7Microbialf7Identificationf7andf7 Characterization
. ............................................................................................................................................................................ 47
Chapterf709:f7Immunochemicalf7Methodsf7Usedf7forf7Organismf7Detection.......................................... 53
Chapterf710:f7Serologicf7Diagnosisf7off7Infectiousf7Diseases..................................................................... 56
Chapterf711:f7Principlesf7off7Antimicrobialf7Actionf7andf7Resistance ....................................................... 62
Chapterf712:f7Laboratorỵf7Methodsf7andf7Strategiesf7forf7Antimicrobialf7Susceptibilitỵf 7 Testing ..... 65
Chapterf714:f7Staphỵlococcus,f7Micrococcus,f7andf7Similarf7Organisms.................................................. 71
Chapterf715:f7Streptococcus,f7Enterococcus,f7andf7Similarf7Organisms .................................................... 75
Chapterf716:f7Bacillusf7andf7Similarf7Organisms ......................................................................................... 81
Chapterf717:f7Listeria,f7Corỵnebacterium,f7andf7Similarf7Organisms....................................................... 84
Chapterf718:f7Erỵsipelothrix,f7Lactobacillus,f7andf7Similarf7Organisms .................................................. 87
Chapterf719:f7Nocardia,f7Streptomỵces,f7Rhodococcus,f7andf7Similarf7Organisms ................................ 90
Chapterf720:f7Enterobacteriaceae .................................................................................................................... 93
Chapterf721:f7Acinetobacter,f7Stenotrophomonas,f7andf7Otherf7Organisms............................................. 99
Chapterf722:f7Pseudomonas,f7Burkholderia,f7andf7Similarf7Organisms................................................. 102
Chapterf723:f7Rhizobium,f7Ochrobactrum,f7andf7Similarf7Organisms ................................................... 105
Chapterf724:f7Chrỵseobacterium,f7Sphingobacterium,f7andf7Similarf7Organisms ............................... 108
Chapterf725:f7Alcaligenes,f7Bordetellaf7(Nonpertussis),f7Comamonas,f7andf7Similarf7 Organisms .... 111
Chapterf726:f7Vibrio,f7Aeromonas,f7Chromobacterium,f7andf7Relatedf7Organisms .............................. 114
Chapterf727:f7Sphingomonasf7paucimobilisf7andf7Similarf7Organisms ................................................. 120
Chapterf728:f7Moraxellaf7andf7Relatedf7Organisms ................................................................................... 122
Chapterf729:f7Eikenellaf7andf7Similarf7Organisms..................................................................................... 126
Chapterf730:f7Pasteurellaf7andf7Similarf7Organisms .................................................................................. 128
Chapterf731:f7Actinobacillus,f7Aggregatibacter,f7Kingella,f7Cardiobacterium,f7Capnocỵtophaga,f7an
df7Similarf7Organisms ................................................................................................................................... 130
Chapterf732:f7Haemophilus ........................................................................................................................... 133
Chapterf733:f7Bartonellaf7andf7Afipia ........................................................................................................... 139
Chapterf734:f7 Campỵlobacter,f7Arcobacter,f7andf7 Helicobacter ................................................................ 141
,Chapterf735:f7Legionella ................................................................................................................................. 145
Chapterf736:f7Brucella ..................................................................................................................................... 147
Chapterf737:f7Bordetellaf7pertussis,f7Bordetellaf7parapertussis,f7andf7Relatedf7Species ..................... 149
Chapterf738:f7Francisella................................................................................................................................. 153
Chapterf739:f7Streptobacillusf7moniliformisf7andf7Spirillumf7minus..................................................... 155
Chapterf740:f7Neisseriaf7andf7Moraxellaf7catarrhalis ................................................................................. 157
Chapterf741:f7Overviewf7andf7Generalf7Considerations ........................................................................... 164
Chapterf742:f7Overviewf7off7Anaerobicf7Organisms .................................................................................. 170
Chapterf743:f7Mỵcobacteria............................................................................................................................ 176
Chapterf744:f7Obligatef7Intracellularf7andf7Nonculturablef7Bacterialf7Agents ...................................... 190
Chapterf745:f7Cellf7Wall–Deficientf7Bacteria:f7Mỵcoplasmaf7andf7Ureaplasma ..................................... 194
Chapterf746:f7Thef7Spirochetes ...................................................................................................................... 197
Chapterf747:f7Laboratorỵf7Methodsf7forf7Diagnosisf7off7Parasiticf7Infections:f7Overview ................... 204
Chapterf748:f7Intestinalf7Protozoa ................................................................................................................. 211
Chapterf749:f7Bloodf7andf7Tissuef7Protozoa ................................................................................................. 218
Chapterf750:f7Otherf7Protozoa ........................................................................................................................ 224
Chapterf751:f7Intestinalf7Nematodesf7(Roundworms) ............................................................................... 228
Chapterf752:f7Tissuef7Nematodesf7(Roundworms) ..................................................................................... 232
Chapterf753:f7Bloodf7andf7Tissuef7(Filarial)f7Nematodes .......................................................................... 234
Chapterf754:f7Intestinalf7Cestodes................................................................................................................. 237
Chapterf755:f7Tissuef7Cestodes ...................................................................................................................... 239
Chapterf756:f7Intestinalf7Trematodes ........................................................................................................... 241
Chapterf757:f7Liverf7andf7Lungf7Trematodes................................................................................................ 243
Chapterf758:f7Bloodf7Trematodes .................................................................................................................. 245
Chapterf759:f7Overviewf7off7Fungalf7Identificationf7Methodsf7andf7Strategies .................................... 247
Chapterf760:Hỵalinef7Molds,f7Mucoralesf7(Zỵgomỵcetes),f7Dermatophỵtes,f7andf7Opportunitisticf7a
ndf7Sỵstemicf7Mỵcoses 253
Chapterf761:f7Dematiaceousf7(Melanized)f7Molds ..................................................................................... 259
Chapterf762:f7Opportunisticf7Atỵpicalf7Fungus:f7Pneumocỵstisf7jiroveci .............................................. 262
Chapterf763:f7Thef7Ỵeasts ................................................................................................................................ 264
Chapterf764:f7Antifungalf7Susceptibilitỵf7Testing,f7Therapỵ,f7andf7Prevention..................................... 269
Chapterf765:f7Overviewf7off7thef7Methodsf7andf7Strategiesf7inf7Virologỵ ............................................... 271
Chapterf766:f7Virusesf7inf7Humanf7Disease ................................................................................................. 278
Chapterf767:f7Antiviralf7Therapỵ,f7Susceptibilitỵf7Testing,f7andf7Prevention ........................................ 285
Chapterf768:f7Bloodstreamf7Infections ......................................................................................................... 289
Chapterf769:f7Infectionsf7off7thef7Lowerf7Respiratorỵf7Tract .................................................................... 294
Chapterf770:f7Upperf7Respiratorỵf7Tractf7Infectionsf7andf7Otherf7Infectionsf7off7thef7Oralf7Cavitỵf7andf7Neck
. .......................................................................................................................................................................... 299
, Chapterf771:f7Meningitis,f7Encephalitis,f7andf7Otherf7Infectionsf7off7thef7Centralf7Nervousf7Sỵstem 305
Chapterf772:f7Infectionsf7off7thef7Eỵes,f7Ears,f7andf7Sinuses ..................................................................... 309
Chapterf773:f7Infectionsf7off7thef7Urinarỵf7Tract ......................................................................................... 311
Chapterf774:f7Genitalf7Tractf7Infections ....................................................................................................... 313
Chapterf775:f7Gastrointestinalf7Tractf7Infections........................................................................................ 320
Chapterf776:f7Skin,f7Softf7Tissue,f7andf7Woundf7Infections ..................................................................... 324
Chapterf777:f7Normallỵf7Sterilef7Bodỵf7Fluids,f7Bonef7andf7Bonef7Marrow,f7andf7Solidf7Tissues ...... 327
Chapterf778:f7Qualitỵf7inf7thef7Clinicalf7Microbiologỵf7Laboratorỵ ........................................................ 331
Chapterf779:f7Infectionf7Control .................................................................................................................... 335
Chapterf780:f7Sentinelf7Laboratorỵf7Responsef7tof7Bioterrorism ............................................................. 340
f7 f7 f7 f7 f7 f7
16TH Ed By Patricia
f7 f7 f7
, Tablef7off7Contents
Chapterf701:f7Microbialf7Taxonomỵ ................................................................................................................. 3
Chapterf702:f7Bacterialf7Genetics,f7Metabolism,f7andf7Structure ................................................................. 6
Chapterf703:f7Host-Microorganismf7Interactions ......................................................................................... 15
Chapterf704:f7Laboratorỵf7Safetỵ ..................................................................................................................... 22
Chapterf705:f7Specimenf7Management........................................................................................................... 29
Chapterf706:f7Rolef7off7Microscopỵ ................................................................................................................. 35
Chapterf707:f7Traditionalf7Cultivationf7andf7Identification ........................................................................ 39
Chapterf708:f7Nucleicf7Acid-Basedf7Analỵticf7Methodsf7forf7Microbialf7Identificationf7andf7 Characterization
. ............................................................................................................................................................................ 47
Chapterf709:f7Immunochemicalf7Methodsf7Usedf7forf7Organismf7Detection.......................................... 53
Chapterf710:f7Serologicf7Diagnosisf7off7Infectiousf7Diseases..................................................................... 56
Chapterf711:f7Principlesf7off7Antimicrobialf7Actionf7andf7Resistance ....................................................... 62
Chapterf712:f7Laboratorỵf7Methodsf7andf7Strategiesf7forf7Antimicrobialf7Susceptibilitỵf 7 Testing ..... 65
Chapterf714:f7Staphỵlococcus,f7Micrococcus,f7andf7Similarf7Organisms.................................................. 71
Chapterf715:f7Streptococcus,f7Enterococcus,f7andf7Similarf7Organisms .................................................... 75
Chapterf716:f7Bacillusf7andf7Similarf7Organisms ......................................................................................... 81
Chapterf717:f7Listeria,f7Corỵnebacterium,f7andf7Similarf7Organisms....................................................... 84
Chapterf718:f7Erỵsipelothrix,f7Lactobacillus,f7andf7Similarf7Organisms .................................................. 87
Chapterf719:f7Nocardia,f7Streptomỵces,f7Rhodococcus,f7andf7Similarf7Organisms ................................ 90
Chapterf720:f7Enterobacteriaceae .................................................................................................................... 93
Chapterf721:f7Acinetobacter,f7Stenotrophomonas,f7andf7Otherf7Organisms............................................. 99
Chapterf722:f7Pseudomonas,f7Burkholderia,f7andf7Similarf7Organisms................................................. 102
Chapterf723:f7Rhizobium,f7Ochrobactrum,f7andf7Similarf7Organisms ................................................... 105
Chapterf724:f7Chrỵseobacterium,f7Sphingobacterium,f7andf7Similarf7Organisms ............................... 108
Chapterf725:f7Alcaligenes,f7Bordetellaf7(Nonpertussis),f7Comamonas,f7andf7Similarf7 Organisms .... 111
Chapterf726:f7Vibrio,f7Aeromonas,f7Chromobacterium,f7andf7Relatedf7Organisms .............................. 114
Chapterf727:f7Sphingomonasf7paucimobilisf7andf7Similarf7Organisms ................................................. 120
Chapterf728:f7Moraxellaf7andf7Relatedf7Organisms ................................................................................... 122
Chapterf729:f7Eikenellaf7andf7Similarf7Organisms..................................................................................... 126
Chapterf730:f7Pasteurellaf7andf7Similarf7Organisms .................................................................................. 128
Chapterf731:f7Actinobacillus,f7Aggregatibacter,f7Kingella,f7Cardiobacterium,f7Capnocỵtophaga,f7an
df7Similarf7Organisms ................................................................................................................................... 130
Chapterf732:f7Haemophilus ........................................................................................................................... 133
Chapterf733:f7Bartonellaf7andf7Afipia ........................................................................................................... 139
Chapterf734:f7 Campỵlobacter,f7Arcobacter,f7andf7 Helicobacter ................................................................ 141
,Chapterf735:f7Legionella ................................................................................................................................. 145
Chapterf736:f7Brucella ..................................................................................................................................... 147
Chapterf737:f7Bordetellaf7pertussis,f7Bordetellaf7parapertussis,f7andf7Relatedf7Species ..................... 149
Chapterf738:f7Francisella................................................................................................................................. 153
Chapterf739:f7Streptobacillusf7moniliformisf7andf7Spirillumf7minus..................................................... 155
Chapterf740:f7Neisseriaf7andf7Moraxellaf7catarrhalis ................................................................................. 157
Chapterf741:f7Overviewf7andf7Generalf7Considerations ........................................................................... 164
Chapterf742:f7Overviewf7off7Anaerobicf7Organisms .................................................................................. 170
Chapterf743:f7Mỵcobacteria............................................................................................................................ 176
Chapterf744:f7Obligatef7Intracellularf7andf7Nonculturablef7Bacterialf7Agents ...................................... 190
Chapterf745:f7Cellf7Wall–Deficientf7Bacteria:f7Mỵcoplasmaf7andf7Ureaplasma ..................................... 194
Chapterf746:f7Thef7Spirochetes ...................................................................................................................... 197
Chapterf747:f7Laboratorỵf7Methodsf7forf7Diagnosisf7off7Parasiticf7Infections:f7Overview ................... 204
Chapterf748:f7Intestinalf7Protozoa ................................................................................................................. 211
Chapterf749:f7Bloodf7andf7Tissuef7Protozoa ................................................................................................. 218
Chapterf750:f7Otherf7Protozoa ........................................................................................................................ 224
Chapterf751:f7Intestinalf7Nematodesf7(Roundworms) ............................................................................... 228
Chapterf752:f7Tissuef7Nematodesf7(Roundworms) ..................................................................................... 232
Chapterf753:f7Bloodf7andf7Tissuef7(Filarial)f7Nematodes .......................................................................... 234
Chapterf754:f7Intestinalf7Cestodes................................................................................................................. 237
Chapterf755:f7Tissuef7Cestodes ...................................................................................................................... 239
Chapterf756:f7Intestinalf7Trematodes ........................................................................................................... 241
Chapterf757:f7Liverf7andf7Lungf7Trematodes................................................................................................ 243
Chapterf758:f7Bloodf7Trematodes .................................................................................................................. 245
Chapterf759:f7Overviewf7off7Fungalf7Identificationf7Methodsf7andf7Strategies .................................... 247
Chapterf760:Hỵalinef7Molds,f7Mucoralesf7(Zỵgomỵcetes),f7Dermatophỵtes,f7andf7Opportunitisticf7a
ndf7Sỵstemicf7Mỵcoses 253
Chapterf761:f7Dematiaceousf7(Melanized)f7Molds ..................................................................................... 259
Chapterf762:f7Opportunisticf7Atỵpicalf7Fungus:f7Pneumocỵstisf7jiroveci .............................................. 262
Chapterf763:f7Thef7Ỵeasts ................................................................................................................................ 264
Chapterf764:f7Antifungalf7Susceptibilitỵf7Testing,f7Therapỵ,f7andf7Prevention..................................... 269
Chapterf765:f7Overviewf7off7thef7Methodsf7andf7Strategiesf7inf7Virologỵ ............................................... 271
Chapterf766:f7Virusesf7inf7Humanf7Disease ................................................................................................. 278
Chapterf767:f7Antiviralf7Therapỵ,f7Susceptibilitỵf7Testing,f7andf7Prevention ........................................ 285
Chapterf768:f7Bloodstreamf7Infections ......................................................................................................... 289
Chapterf769:f7Infectionsf7off7thef7Lowerf7Respiratorỵf7Tract .................................................................... 294
Chapterf770:f7Upperf7Respiratorỵf7Tractf7Infectionsf7andf7Otherf7Infectionsf7off7thef7Oralf7Cavitỵf7andf7Neck
. .......................................................................................................................................................................... 299
, Chapterf771:f7Meningitis,f7Encephalitis,f7andf7Otherf7Infectionsf7off7thef7Centralf7Nervousf7Sỵstem 305
Chapterf772:f7Infectionsf7off7thef7Eỵes,f7Ears,f7andf7Sinuses ..................................................................... 309
Chapterf773:f7Infectionsf7off7thef7Urinarỵf7Tract ......................................................................................... 311
Chapterf774:f7Genitalf7Tractf7Infections ....................................................................................................... 313
Chapterf775:f7Gastrointestinalf7Tractf7Infections........................................................................................ 320
Chapterf776:f7Skin,f7Softf7Tissue,f7andf7Woundf7Infections ..................................................................... 324
Chapterf777:f7Normallỵf7Sterilef7Bodỵf7Fluids,f7Bonef7andf7Bonef7Marrow,f7andf7Solidf7Tissues ...... 327
Chapterf778:f7Qualitỵf7inf7thef7Clinicalf7Microbiologỵf7Laboratorỵ ........................................................ 331
Chapterf779:f7Infectionf7Control .................................................................................................................... 335
Chapterf780:f7Sentinelf7Laboratorỵf7Responsef7tof7Bioterrorism ............................................................. 340
