Faisalsardar1
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34 items
bioinformatics course
from basics to deep in bioinformatics field
- Package deal
- • 6 items •
- Fourier transforms and convolution • Summary
- bioinformatics techniques in image analysis • Presentation
- what is microscopy in details • Summary
- Diffusion and cellular-level simulation by bioinformatics • Class notes
- ligand-protein docking & virtual screening • Summary
- And more ….
from basics to deep in bioinformatics field
protein design using bioinformatics
Computer-Based Design of Novel Protein Structures The coming of age of de novo protein design A Brief History of De Novo Protein Design: Minimal, Rational, and Computational
- Class notes
- • 30 pages •
Computer-Based Design of Novel Protein Structures The coming of age of de novo protein design A Brief History of De Novo Protein Design: Minimal, Rational, and Computational
thesis topics for bioinformatics & computational biology
Sample Projects (only accessible to enrolled students): secret thesis topics thesis pipeline bioinformatics thesis pipeline
- Other
- • 16 pages •
Sample Projects (only accessible to enrolled students): secret thesis topics thesis pipeline bioinformatics thesis pipeline
x-ray crystallography
Super-resolution biomolecular crystallography with low-resolution data Improved low-resolution crystallographic refinement with Phenix and Rosetta Computation can contribute to addressing such questions in at least two distinct ways. First, computational analysis is required to extract useful information from experimental measurements. Second, one can use computational techniques to predict structures, dynamics, and important biochemical properties.
- Package deal
- Summary
- • 30 pages •
Super-resolution biomolecular crystallography with low-resolution data Improved low-resolution crystallographic refinement with Phenix and Rosetta Computation can contribute to addressing such questions in at least two distinct ways. First, computational analysis is required to extract useful information from experimental measurements. Second, one can use computational techniques to predict structures, dynamics, and important biochemical properties.
ligand-protein docking & virtual screening
Ultra-large library docking for discovering new chemotypes Prediction of Protein — Ligand Interactions. Docking and Scoring: Successes and Gaps Glide: A New Approach for Rapid, Accurate Docking and Scoring
- Package deal
- Summary
- • 31 pages •
Ultra-large library docking for discovering new chemotypes Prediction of Protein — Ligand Interactions. Docking and Scoring: Successes and Gaps Glide: A New Approach for Rapid, Accurate Docking and Scoring
Diffusion and cellular-level simulation by bioinformatics
Random Walks and 1-D Diffusion Continuum Diffusion Equations
- Package deal
- Class notes
- • 38 pages •
Random Walks and 1-D Diffusion Continuum Diffusion Equations
what is microscopy in details
Super-resolution fluorescence imaging with single molecules Fluorescence Microscopy light microscope
- Package deal
- Summary
- • 21 pages •
Super-resolution fluorescence imaging with single molecules Fluorescence Microscopy light microscope
bioinformatics techniques in image analysis
How can structural information contribute to the design of drugs, proteins, or perhaps even cells? • Reducing image noise • Sharpening images • Image description and classification • Practical image processing tips computational methods for studying spatial organization of cells, including computational analysis of optical microscopy images and video, and simulations at the cellular scale.
- Package deal
- Presentation
- • 36 pages •
How can structural information contribute to the design of drugs, proteins, or perhaps even cells? • Reducing image noise • Sharpening images • Image description and classification • Practical image processing tips computational methods for studying spatial organization of cells, including computational analysis of optical microscopy images and video, and simulations at the cellular scale.
Fourier transforms and convolution
Computation can contribute to addressing such questions in at least two distinct ways. First, computational analysis is required to extract useful information from experimental measurements. Second, one can use computational techniques to predict structures, dynamics, and important biochemical properties.
- Package deal
- Summary
- • 39 pages •
Computation can contribute to addressing such questions in at least two distinct ways. First, computational analysis is required to extract useful information from experimental measurements. Second, one can use computational techniques to predict structures, dynamics, and important biochemical properties.
theory of protein prediction
Improved protein structure prediction using potentials from deep learning Protein Structure Prediction bioinformatic techniques
- Summary
- • 54 pages •
Improved protein structure prediction using potentials from deep learning Protein Structure Prediction bioinformatic techniques