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Summary Metabolism Mastery Bundle: TCA Cycle, Gluconeogenesis, Glycogen & HMP Pathway Study Guide | High-Yield Biochem Notes for Med School, USMLE

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Ready to master the four most challenging topics in biochemistry metabolism? This comprehensive 'Metabolism Mastery Bundle' combines our in-depth guides on the TCA Cycle, Gluconeogenesis, Glycogen Metabolism, and the HMP Pathway into one essential, high-yield resource! WHAT YOU'LL MASTER IN THIS BUNDLE: **Citric Acid Cycle *Key regulatory enzymes and their control mechanisms. *Complete energy yield calculations. *Clinical Correlation: Arsenic Toxicity **Gluconeogenesis *The four key bypass enzymes that overcome irreversible glycolysis steps. *Essential substrates: Lactate, Glycerol, and Amino Acids. *Hormonal (Glucagon) and allosteric (Acetyl-CoA) regulation. ** Glycogen metabolism *Step-by-step Glycogenesis (synthesis) and Glycogenolysis (breakdown). *Regulation by Insulin, Glucagon, and Epinephrine. *In-Depth Clinical Guide to Glycogen Storage Diseases (GSDs), including Von Gierke, Pompe, Cori, McArdle, and more. ** Pentose Phosphate pathway *Oxidative and Non-Oxidative phases. *Crucial roles of NADPH (antioxidant defense, respiratory burst).# *Clinical Focus: Detailed explanations of G6PD Deficiency and Chronic Granulomatous Disease (CGD).

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Biochemistry
Study Guide
Authored by a Biochemistry Professor


METABOLISM MASTERY
BUNDLE
TCA Cycle • Gluconeogenesis • Glycogen •
Pentose Phosphate Pathway

,Author: Assoc. Prof. Dr Zeynep Caliskan, Department of Medical
Biochemistry

Copyright © 2025 The Curious Biochemist. All rights reserved
No part of this publication may be reproduced, distributed, or
transmitted in any form or by any means, electronic or mechanical,
including photocopying, recording, or by any information storage
and retrieval system, without the prior written permission of the
author.

Disclaimer
This study guide has been prepared solely for educational and
academic purposes. The content is based on standard medical
textbooks and is not intended to replace clinical judgment or
professional medical advice. Students are advised to consult
qualified healthcare professionals in real clinical settings.




Contents
Citric Acid Cycle ............................................................. Page 3
Gluconeogenesis ............................................................ Page 10
Glycogen Metabolism ................................................... Page 18
Pentose Phosphate Pathway ....................................... Page 25

, 3

CITRIC ACID CYCLE
(KREBS CYCLE/TRICARBOXYLIC ACID (TCA) CYCLE


GENERAL
• The TCA cycle plays multiple roles in metabolism.


• Its primary function is to produce energy by breaking down acetyl-CoA into
carbon dioxide. Acetyl-CoA is derived from the metabolism of fuel molecules like
amino acids, fatty acids, and carbohydrates.


• The cycle also serves as a metabolic crossroads for various metabolic pathways,
including gluconeogenesis, lipogenesis, amino acid transamination, heme
synthesis, and ketone breakdown.




"Citric acid cycle" by Theislikerice/ Wikimedia Commons/CC BY-SA 4.0
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The Curious Biochemist

I am an Associate Professor of Biochemistry with over 12 years of academic teaching experience. My mission is to simplify complex biochemical concepts for students. My comprehensive study guides are designed for medical students, nursing students, and anyone preparing for the USMLE, MCAT, NCLEX, and PANCE exams. Inside, you'll find everything you need to excel: clear biochemical pathway diagrams, clinical correlations, flowcharts, summary tables, memorable mnemonics, high-yield exam notes, cheat sheets, and extensive practice questions (MCQs, fill-in-the-blanks). Stop just memorizing and start truly understanding. Ace your exams with resources crafted by a seasoned academic.

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