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Methods in Neuroscience + Practice Questions

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A summary of lecture notes on the methods used in the world of neuroscience, along with practice questions to help students better understand and test their knowledge on the concept. Includes technological methods such as, fMRI, sfMRI, CAT, TMS, etc.

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January 7, 2025
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6
Written in
2024/2025
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Michael souza
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‭Methods‬


‭The Basic Framework‬

‭carefully designed experiments → mental processes involved in a task → behavioural dependent variables‬

‭🧠‬‭looks at the things you can control to gain a better understanding on brain activity/the‬
‭ ental processes involved in a task‬
m
‭🧠‬‭basic bones: stimulus‬‭→‬‭processing the info‬‭→‬‭response‬
🧠
‭ ‬‭the framework allows for linking the brain to various cognitive functions through studying‬
‭the spots of activation during diff tasks‬

‭Neurophysiology:‬‭Single Cell Recordings‬
‭🧠‬‭a method that allows for listening in on the brain to understand individual neuronal‬
‭response‬
🧠
‭ ‬‭implantation of a singular electrode system to a spot in the brain‬
🧠
‭ ‬‭measure the how activated a neuron becomes when looking at something being shown‬
‭○‬ ‭within the subject’s (usually a monkey) field of view place a fixation point‬
‭○‬ ‭shine a light within the receptive field‬
🧠
‭ ‬‭involves an invasive brain surgery to implant the electrode‬
🧠
‭ ‬‭this process can also look at cognitive abilities [i.e. spatial working memory]‬
‭○‬ ‭the process‬
‭■‬ ‭place a monkey in front of a cue (‬‭two holes and one‬‭has a treat‬‭)‬
‭■‬ ‭cover both holes and close the door to the monkey’s cage (basically block the‬
‭monkey from seeing the covered holes)‬
‭■‬ ‭open the door and wait for the monkey’s response‬
‭○‬ ‭non-human primates are really good at this (^) task‬
‭○‬ ‭why?‬
‭■‬ ‭a way to measure frontal lobe activity in regards to short-term/working‬
‭memory (more specifically the maintenance of spatial location using working‬
‭memory‬
🧠
‭ ‬‭limitation(s)‬
‭○‬ ‭only looks at a handful of neurons at a time‬
‭■‬ ‭however it’s still a good way of getting a sense of neural activity‬

‭Neurophysiology:‬‭Lesion Studies‬
🧠
‭ ‬‭assessing the impacts of cognition from damage to a particular part of the brain‬
🧠
‭ ‬‭limitation(s)‬
‭○‬ ‭not accurate‬
‭■‬ ‭there can be a wide range of impact, meaning can’t accurately tell what part is‬
‭connected to what cognitive function‬
‭○‬ ‭unable to surgically cause a lesion‬
‭■‬ ‭have to wait for an individual that’s naturally already faced a damage to‬
‭specific brain areas‬

‭Cognitive Neuroimaging‬
‭🧠‬‭medical/clinical uses‬
‭○‬ ‭identifying pathophysiology‬
‭■‬ ‭aka identifying the cause for a neurological impairment (i.e. tumour)‬

, ‭ ‬ ‭localizing anatomical and/or functional disruption(s)‬

‭🧠‬‭basic research/experimental uses‬
‭○‬ ‭structural analyses‬
‭■‬ ‭examining the topography of both healthy and impaired brains‬
‭○‬ ‭functional analyses‬
‭■‬ ‭examining the brain functioning of both healthy and impaired brains‬
‭■‬ ‭how the brain works the way it does‬

‭Computerized Axial Tomography (CT)‬
‭🧠‬‭computerized‬‭= uses a computer‬ ‭axial‬‭= birds-eye‬‭view of brain/body‬ ‭tomograph‬‭= image‬
‭of slice of body‬
‭○‬ ‭overall, it’s a 3D x-ray‬
🧠
‭ ‬‭provides valuable info on tissue and allows for recreating imaging of the body using tissue‬
‭absorption rates‬
‭○‬ ‭diff tissues absorbs radiation at diff rates‬
🧠
‭ ‬‭limitation(s)‬
‭○‬ ‭doesn’t provide a clear or detailed image‬
‭○‬ ‭exposure to radiation isn’t good for people‬
‭■‬ ‭repeated testing is not advisable‬

‭Structural Magnetic Resonance Imaging (sMRI)‬
‭🧠‬‭structural‬‭= the body‬ ‭magnetic‬‭= powerful magnet‬ ‭resonance‬ ‭= bounce off signal‬ ‭imagery‬‭=‬
‭an image‬
🧠
‭ ‬‭uses a very powerful magnet instead of radiation‬
‭○‬ ‭the more powerful the magnet = the more better the image‬
‭○‬ ‭T = tesla‬
‭■‬ ‭the strength of a magnetic field‬
🧠
‭ ‬‭protons in the body tend to follow the powerful magnetic field and line up‬
🧠
‭ ‬‭a pulse of radio frequency is sent out to knock the protons out of line‬
‭○‬ ‭this is “‬‭resonance‬‭”‬
🧠
‭ ‬‭diff parts of the body have diff levels of resonance‬
🧠
‭ ‬‭has extremely good spatial resolution‬
🧠
‭ ‬‭allows for talking about the brain in terms of‬‭voxel‬
‭○‬ ‭3D measurement for brain area‬
‭○‬ ‭voxel is the measurement used to quantify the size of a brain injury‬
🧠
‭ ‬‭allows for correlating brain structure/size with behaviour‬
‭○‬ ‭i.e.‬‭hippocampal size is negatively correlated with‬‭severity of PTSD‬‭(bigger hippocampus‬
‭= less PTSD severity)‬
🧠
‭ ‬‭allows for finding commonality among individuals with brain injuries and the functions‬
‭impaired‬
‭○‬ ‭identifying consistencies can help in determining the specific functions of specific‬
‭brain structures‬

‭Diffusion Tensor Imaging (DTI)‬
‭🧠‬‭a structural technique that solely looks at white matter‬
‭○‬ ‭this technique still uses an MRI machine‬
🧠
‭ ‬‭the process of this technique includes jostling the subject to get their fluid moving through‬
‭their body‬
‭○‬ ‭the direction of water in the brain is then measured‬
‭■‬ ‭water moves more readily with white matter pathways‬
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