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Protein Structure & Function – Full Biochemistry Summary with Hemoglobin, Folding & Disease

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This comprehensive and high-yield biochemistry guide covers all major aspects of protein structure and function, making it ideal for medical, biology, and biochemistry students. From the basics of amino acids to disease-causing mutations, this note is both exam-ready and clinically relevant. Topics Covered: 4 levels of protein structure: primary, secondary, tertiary, quaternary Hemoglobin vs. Myoglobin: oxygen binding, cooperativity, Bohr effect Folding mechanisms, hydrophobic effect, disulfide bridges Anfinsen’s experiment and the sequence-structure-function concept Amino acid classification by polarity and charge Peptide bond geometry and flexibility (φ and ψ angles) Ramachandran plot and allowed conformations Secondary structures: alpha helices, beta sheets, loops, turns Supersecondary motifs: beta-hairpin, beta-alpha-beta, helix-turn-helix Tertiary packing forces: hydrogen bonds, van der Waals, electrostatics Quaternary assembly and functional regulation Disease link: Sickle Cell Anemia (Glu → Val mutation and its effects) Why it's useful: Explains not just structure, but function and disease implications Strong visuals and logic for pathway reasoning and MCQs Covers foundational content for exams, assignments, or interviews

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Uploaded on
July 24, 2025
Number of pages
9
Written in
2024/2025
Type
Summary

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📘 Protein Structure and Function – Expanded Summary Notes




🔬 1. Introduction to Proteins

Proteins are fundamental biological macromolecules composed of amino acid chains.
They are involved in nearly every cellular process, including:

 Structural roles (e.g. collagen in connective tissue)

 Catalytic activity (enzymes like DNA polymerase)

 Transport (hemoglobin carrying oxygen)

 Communication (hormones like insulin)

 Defense (antibodies in the immune system)

 Movement (actin and myosin in muscle contraction)

Key Concept: The functionality of a protein is directly dependent on its 3D structure,
which is determined by its amino acid sequence (primary structure).




🧩 2. Structure–Function Relationship in Proteins

Proteins are asymmetrical molecules that fold into unique three-dimensional shapes.
This asymmetry and specificity allow proteins to perform specialized tasks.

 Proteins with very different amino acid sequences can adopt similar 3D folds,
highlighting the evolutionary conservation of essential structural motifs.

 Structure governs:

o Substrate specificity in enzymes

o Ligand binding in receptors

, o Mechanical strength in structural proteins

A change in structure—due to mutation, denaturation, or misfolding—can lead to loss of
function or disease.




🫁 3. Hemoglobin vs Myoglobin – Oxygen Binding Proteins

Hemoglobin (Hb):

 Structure: A tetramer (4 polypeptide chains – 2 alpha, 2 beta)

 Function: Transports oxygen from lungs to tissues

 Cooperativity: Binding of O₂ to one subunit enhances binding to others

 Oxygen Binding Curve: Sigmoidal, due to cooperative binding

Myoglobin (Mb):

 Structure: Monomer (single polypeptide chain)

 Function: Stores oxygen in muscle tissues

 Affinity: High oxygen affinity even at low O₂ concentrations

 Oxygen Binding Curve: Hyperbolic, no cooperativity

Biological Implication: Hb is tuned for oxygen delivery, while Mb is optimized for
oxygen storage.




🔄 4. Cooperativity in Hemoglobin: The Key to Efficient Oxygen Transport

 T (tense) state: Low O₂ affinity

 R (relaxed) state: High O₂ affinity
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