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Lecture notes

GEN 6: Replicating the Genome

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Lecture notes from Imperial College London, Medical Biosciences BSc, 2nd year, genetics and genomics (GEN) module. Focus on replication of the genome. Before a cell divides, the entire genome of 3 billion base pairs must first be copied: accurately, quickly and just once per cell cycle. During this replication, chromosomal DNA must be unwound without getting tangled or suffering breakages and, if damage occurs, it must be repaired. Failure to meet any of these requirements may result in damage leading to cell death or, worse, mutation and oncogenesis. Here, I describe the intricate system to ensure the events of replication are correctly coordinated during the cell cycle and the ‘end-replication problem’ (telomeres). Learning objectives: - Review the basic molecular mechanisms of DNA replication. - Explain why cell cycle control is essential for genome maintenance. - Describe replication origins and their control. - Explain how cyclin-dependent kinases control S- and M-phases. - Describe the topological problems of DNA replication and how they are resolved. - Describe the problem of DNA end-replication and the role of telomerase.

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Uploaded on
October 4, 2023
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Written in
2022/2023
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Replicating the genome
- some believe that increasing telomerase activity may extend lifespan

Basic molecular mechanism of DNA replication
- DNA replicated by a replisome: complex of proteins
=> DNA pol adds nucleotides in the 5’ to 3’ direction to a DNA primer
- DNA helicase unwinds the strands => replication machinery accesses DNA


-
n


1 replication bubble = 2
lagging and 2 leading strands




Control DNA replication in the cell cycle
- high fidelity of DNA pol: 1 error per 10^8 bp --
-




-N -



&
- BUT need control of S-phase (replication) & M-phase

·
.




--
- reversible



↑ * me

=> chr only copied once - extended
(senescence)

-
1W
=> M-phase after S-phase completion - terminal cellular
-




-"
↳ differentiation
=> S-phase preceded by M-phase * ⑮



- mitotic error: cell function/ survival/ mutations (=> cancer) nee ingest
- meiotic error (duplication/ segregation): aneuploidy (altered chr number)/ chr rearrangement
=> sterility, developmental defects, heritable disease


- cells that don’t follow cell cycle:
=> meiotic cells: 2 cell divisions without S-phase (=> halve chr number)
=> megakaryocites: repeated S-phases without M => enlarge + polyploid for platelet production
=> senescent cells: enter Go indefinitely (dormancy) more than 2 homologues

, Replication origins & control of their activation
- prokaryotes: 1 replication origin (= where DNA pol begin DNA synthesis) in circular chr
=> 2 replication forks moving in opposite directions
=> bacterial cells divide every 30min (genome 1000-fold smaller than human genome)
=> bacterial DNA pol synthesises 500 nucleotides/ s (10 times faster than human DNA pol)




- mammalian: larger genomes => multiple replication origins (~50,000: 1 per 70kb)
=> mammalian cells divide every 20h (S-phase in 8h/ up to 30min for specialised cells)




=> simultaneous replication forks


=> replication bubbles coalesce
(3 fuse before S-phase completed)

- eukaryotes do not have a conserved DNA sequence at their replication origin (not same sequence)
=> origin licensing: pre-replicative complex (preRC) assembled

v

origin recognition complex (ORC) +
Mcm helicases (6 Mcm proteins) added
with Cdc6 & Cdt1
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