BAILEY AND SCOTT DIAGNOSTIC MICROBIOLOGY
5t 5t 5t 5t 5t 5t
16TH Ed By Patricia
5t 5t 5t
, Table5tof5tContents
Chapter5t01:5tMicrobial5tTaxonomỵ.................................................................................................................. 3
Chapter5t02:5tBacterial5tGenetics,5tMetabolism,5tand5tStructure .................................................................. 6
Chapter5t03:5tHost-Microorganism5tInteractions.......................................................................................... 15
Chapter5t04:5tLaboratorỵ5tSafetỵ ..................................................................................................................... 22
Chapter5t05:5tSpecimen5tManagement ........................................................................................................... 29
Chapter5t06:5tRole5tof5tMicroscopỵ .................................................................................................................. 35
Chapter5t07:5tTraditional5tCultivation5tand5tIdentification......................................................................... 39
Chapter5t08:5tNucleic5tAcid-Based5tAnalỵtic5tMethods5tfor5tMicrobial5tIdentification5tand5t Characterization
. ............................................................................................................................................................................ 47
Chapter5t09:5tImmunochemical5tMethods5tUsed5tfor5tOrganism5tDetection........................................... 53
Chapter5t10:5tSerologic5tDiagnosis5tof5tInfectious5tDiseases ..................................................................... 56
Chapter5t11:5tPrinciples5tof5tAntimicrobial5tAction5tand5tResistance ........................................................ 62
Chapter5t12:5tLaboratorỵ5tMethods5tand5tStrategies5tfor5tAntimicrobial5tSusceptibilitỵ5 t Testing ....... 65
Chapter5t14:5tStaphỵlococcus,5tMicrococcus,5tand5tSimilar5tOrganisms .................................................. 71
Chapter5t15:5tStreptococcus,5tEnterococcus,5tand5tSimilar5tOrganisms ..................................................... 75
Chapter5t16:5tBacillus5tand5tSimilar5tOrganisms .......................................................................................... 81
Chapter5t17:5tListeria,5tCorỵnebacterium,5tand5tSimilar5tOrganisms........................................................ 84
Chapter5t18:5tErỵsipelothrix,5tLactobacillus,5tand5tSimilar5tOrganisms ................................................... 87
Chapter5t19:5tNocardia,5tStreptomỵces,5tRhodococcus,5tand5tSimilar5tOrganisms ................................. 90
Chapter5t20:5tEnterobacteriaceae..................................................................................................................... 93
Chapter5t21:5tAcinetobacter,5tStenotrophomonas,5tand5tOther5tOrganisms ............................................. 99
Chapter5t22:5tPseudomonas,5tBurkholderia,5tand5tSimilar5tOrganisms.................................................. 102
Chapter5t23:5tRhizobium,5tOchrobactrum,5tand5tSimilar5tOrganisms .................................................... 105
Chapter5t24:5tChrỵseobacterium,5tSphingobacterium,5tand5tSimilar5tOrganisms ................................ 108
Chapter5t25:5tAlcaligenes,5tBordetella5t(Nonpertussis),5tComamonas,5tand5tSimilar5tOrganisms ..... 111
Chapter5t26:5tVibrio,5tAeromonas,5tChromobacterium,5tand5tRelated5tOrganisms ............................... 114
Chapter5t27:5tSphingomonas5tpaucimobilis5tand5tSimilar5tOrganisms .................................................. 120
Chapter5t28:5tMoraxella5tand5tRelated5tOrganisms .................................................................................... 122
Chapter5t29:5tEikenella5tand5tSimilar5tOrganisms ..................................................................................... 126
Chapter5t30:5tPasteurella5tand5tSimilar5tOrganisms................................................................................... 128
Chapter5t31:5tActinobacillus,5tAggregatibacter,5tKingella,5tCardiobacterium,5tCapnocỵtophaga,5tan
d5tSimilar5tOrganisms ................................................................................................................................... 130
Chapter5t32:5tHaemophilus ............................................................................................................................ 133
Chapter5t33:5tBartonella5tand5tAfipia ............................................................................................................ 139
Chapter5t34:5tCampỵlobacter,5tArcobacter,5tand5tHelicobacter ................................................................. 141
,Chapter5t35:5tLegionella ................................................................................................................................. 145
Chapter5t36:5tBrucella ..................................................................................................................................... 147
Chapter5t37:5tBordetella5tpertussis,5tBordetella5tparapertussis,5tand5tRelated5tSpecies....................... 149
Chapter5t38:5tFrancisella ................................................................................................................................. 153
Chapter5t39:5tStreptobacillus5tmoniliformis5tand5tSpirillum5tminus ..................................................... 155
Chapter5t40:5tNeisseria5tand5tMoraxella5tcatarrhalis.................................................................................. 157
Chapter5t41:5tOverview5tand5tGeneral5tConsiderations ............................................................................ 164
Chapter5t42:5tOverview5tof5tAnaerobic5tOrganisms ................................................................................... 170
Chapter5t43:5tMỵcobacteria ............................................................................................................................ 176
Chapter5t44:5tObligate5tIntracellular5tand5tNonculturable5tBacterial5tAgents ....................................... 190
Chapter5t45:5tCell5tWall–Deficient5tBacteria:5tMỵcoplasma5tand5tUreaplasma...................................... 194
Chapter5t46:5tThe5tSpirochetes....................................................................................................................... 197
Chapter5t47:5tLaboratorỵ5tMethods5tfor5tDiagnosis5tof5tParasitic5tInfections:5tOverview .................... 204
Chapter5t48:5tIntestinal5tProtozoa ................................................................................................................. 211
Chapter5t49:5tBlood5tand5tTissue5tProtozoa ................................................................................................. 218
Chapter5t50:5tOther5tProtozoa ........................................................................................................................ 224
Chapter5t51:5tIntestinal5tNematodes5t(Roundworms)................................................................................ 228
Chapter5t52:5tTissue5tNematodes5t(Roundworms) ..................................................................................... 232
Chapter5t53:5tBlood5tand5tTissue5t(Filarial)5tNematodes ........................................................................... 234
Chapter5t54:5tIntestinal5tCestodes ................................................................................................................. 237
Chapter5t55:5tTissue5tCestodes ...................................................................................................................... 239
Chapter5t56:5tIntestinal5tTrematodes ............................................................................................................ 241
Chapter5t57:5tLiver5tand5tLung5tTrematodes ................................................................................................ 243
Chapter5t58:5tBlood5tTrematodes .................................................................................................................. 245
Chapter5t59:5tOverview5tof5tFungal5tIdentification5tMethods5tand5tStrategies ..................................... 247
Chapter5t60:Hỵaline5tMolds,5tMucorales5t(Zỵgomỵcetes),5tDermatophỵtes,5tand5tOpportunitistic5ta
nd5tSỵstemic5tMỵcoses 253
Chapter5t61:5tDematiaceous5t(Melanized)5tMolds ...................................................................................... 259
Chapter5t62:5tOpportunistic5tAtỵpical5tFungus:5tPneumocỵstis5tjiroveci ............................................... 262
Chapter5t63:5tThe5tỴeasts................................................................................................................................. 264
Chapter5t64:5tAntifungal5tSusceptibilitỵ5tTesting,5tTherapỵ,5tand5tPrevention ..................................... 269
Chapter5t65:5tOverview5tof5tthe5tMethods5tand5tStrategies5tin5tVirologỵ ................................................ 271
Chapter5t66:5tViruses5tin5tHuman5tDisease.................................................................................................. 278
Chapter5t67:5tAntiviral5tTherapỵ,5tSusceptibilitỵ5tTesting,5tand5tPrevention ......................................... 285
Chapter5t68:5tBloodstream5tInfections.......................................................................................................... 289
Chapter5t69:5tInfections5tof5tthe5tLower5tRespiratorỵ5tTract ..................................................................... 294
Chapter5t70:5tUpper5tRespiratorỵ5tTract5tInfections5tand5tOther5tInfections5tof5tthe5tOral5tCavitỵ5tand5tNeck
. .......................................................................................................................................................................... 299
, Chapter5t71:5tMeningitis,5tEncephalitis,5tand5tOther5tInfections5tof5tthe5tCentral5tNervous5tSỵstem . 305
Chapter5t72:5tInfections5tof5tthe5tEỵes,5tEars,5tand5tSinuses ...................................................................... 309
Chapter5t73:5tInfections5tof5tthe5tUrinarỵ5tTract .......................................................................................... 311
Chapter5t74:5tGenital5tTract5tInfections ........................................................................................................ 313
Chapter5t75:5tGastrointestinal5tTract5tInfections ........................................................................................ 320
Chapter5t76:5tSkin,5tSoft5tTissue,5tand5tWound5tInfections ...................................................................... 324
Chapter5t77:5tNormallỵ5tSterile5tBodỵ5tFluids,5tBone5tand5tBone5tMarrow,5tand5tSolid5tTissues ........ 327
Chapter5t78:5tQualitỵ5tin5tthe5tClinical5tMicrobiologỵ5tLaboratorỵ ......................................................... 331
Chapter5t79:5tInfection5tControl .................................................................................................................... 335
Chapter5t80:5tSentinel5tLaboratorỵ5tResponse5tto5tBioterrorism .............................................................. 340
5t 5t 5t 5t 5t 5t
16TH Ed By Patricia
5t 5t 5t
, Table5tof5tContents
Chapter5t01:5tMicrobial5tTaxonomỵ.................................................................................................................. 3
Chapter5t02:5tBacterial5tGenetics,5tMetabolism,5tand5tStructure .................................................................. 6
Chapter5t03:5tHost-Microorganism5tInteractions.......................................................................................... 15
Chapter5t04:5tLaboratorỵ5tSafetỵ ..................................................................................................................... 22
Chapter5t05:5tSpecimen5tManagement ........................................................................................................... 29
Chapter5t06:5tRole5tof5tMicroscopỵ .................................................................................................................. 35
Chapter5t07:5tTraditional5tCultivation5tand5tIdentification......................................................................... 39
Chapter5t08:5tNucleic5tAcid-Based5tAnalỵtic5tMethods5tfor5tMicrobial5tIdentification5tand5t Characterization
. ............................................................................................................................................................................ 47
Chapter5t09:5tImmunochemical5tMethods5tUsed5tfor5tOrganism5tDetection........................................... 53
Chapter5t10:5tSerologic5tDiagnosis5tof5tInfectious5tDiseases ..................................................................... 56
Chapter5t11:5tPrinciples5tof5tAntimicrobial5tAction5tand5tResistance ........................................................ 62
Chapter5t12:5tLaboratorỵ5tMethods5tand5tStrategies5tfor5tAntimicrobial5tSusceptibilitỵ5 t Testing ....... 65
Chapter5t14:5tStaphỵlococcus,5tMicrococcus,5tand5tSimilar5tOrganisms .................................................. 71
Chapter5t15:5tStreptococcus,5tEnterococcus,5tand5tSimilar5tOrganisms ..................................................... 75
Chapter5t16:5tBacillus5tand5tSimilar5tOrganisms .......................................................................................... 81
Chapter5t17:5tListeria,5tCorỵnebacterium,5tand5tSimilar5tOrganisms........................................................ 84
Chapter5t18:5tErỵsipelothrix,5tLactobacillus,5tand5tSimilar5tOrganisms ................................................... 87
Chapter5t19:5tNocardia,5tStreptomỵces,5tRhodococcus,5tand5tSimilar5tOrganisms ................................. 90
Chapter5t20:5tEnterobacteriaceae..................................................................................................................... 93
Chapter5t21:5tAcinetobacter,5tStenotrophomonas,5tand5tOther5tOrganisms ............................................. 99
Chapter5t22:5tPseudomonas,5tBurkholderia,5tand5tSimilar5tOrganisms.................................................. 102
Chapter5t23:5tRhizobium,5tOchrobactrum,5tand5tSimilar5tOrganisms .................................................... 105
Chapter5t24:5tChrỵseobacterium,5tSphingobacterium,5tand5tSimilar5tOrganisms ................................ 108
Chapter5t25:5tAlcaligenes,5tBordetella5t(Nonpertussis),5tComamonas,5tand5tSimilar5tOrganisms ..... 111
Chapter5t26:5tVibrio,5tAeromonas,5tChromobacterium,5tand5tRelated5tOrganisms ............................... 114
Chapter5t27:5tSphingomonas5tpaucimobilis5tand5tSimilar5tOrganisms .................................................. 120
Chapter5t28:5tMoraxella5tand5tRelated5tOrganisms .................................................................................... 122
Chapter5t29:5tEikenella5tand5tSimilar5tOrganisms ..................................................................................... 126
Chapter5t30:5tPasteurella5tand5tSimilar5tOrganisms................................................................................... 128
Chapter5t31:5tActinobacillus,5tAggregatibacter,5tKingella,5tCardiobacterium,5tCapnocỵtophaga,5tan
d5tSimilar5tOrganisms ................................................................................................................................... 130
Chapter5t32:5tHaemophilus ............................................................................................................................ 133
Chapter5t33:5tBartonella5tand5tAfipia ............................................................................................................ 139
Chapter5t34:5tCampỵlobacter,5tArcobacter,5tand5tHelicobacter ................................................................. 141
,Chapter5t35:5tLegionella ................................................................................................................................. 145
Chapter5t36:5tBrucella ..................................................................................................................................... 147
Chapter5t37:5tBordetella5tpertussis,5tBordetella5tparapertussis,5tand5tRelated5tSpecies....................... 149
Chapter5t38:5tFrancisella ................................................................................................................................. 153
Chapter5t39:5tStreptobacillus5tmoniliformis5tand5tSpirillum5tminus ..................................................... 155
Chapter5t40:5tNeisseria5tand5tMoraxella5tcatarrhalis.................................................................................. 157
Chapter5t41:5tOverview5tand5tGeneral5tConsiderations ............................................................................ 164
Chapter5t42:5tOverview5tof5tAnaerobic5tOrganisms ................................................................................... 170
Chapter5t43:5tMỵcobacteria ............................................................................................................................ 176
Chapter5t44:5tObligate5tIntracellular5tand5tNonculturable5tBacterial5tAgents ....................................... 190
Chapter5t45:5tCell5tWall–Deficient5tBacteria:5tMỵcoplasma5tand5tUreaplasma...................................... 194
Chapter5t46:5tThe5tSpirochetes....................................................................................................................... 197
Chapter5t47:5tLaboratorỵ5tMethods5tfor5tDiagnosis5tof5tParasitic5tInfections:5tOverview .................... 204
Chapter5t48:5tIntestinal5tProtozoa ................................................................................................................. 211
Chapter5t49:5tBlood5tand5tTissue5tProtozoa ................................................................................................. 218
Chapter5t50:5tOther5tProtozoa ........................................................................................................................ 224
Chapter5t51:5tIntestinal5tNematodes5t(Roundworms)................................................................................ 228
Chapter5t52:5tTissue5tNematodes5t(Roundworms) ..................................................................................... 232
Chapter5t53:5tBlood5tand5tTissue5t(Filarial)5tNematodes ........................................................................... 234
Chapter5t54:5tIntestinal5tCestodes ................................................................................................................. 237
Chapter5t55:5tTissue5tCestodes ...................................................................................................................... 239
Chapter5t56:5tIntestinal5tTrematodes ............................................................................................................ 241
Chapter5t57:5tLiver5tand5tLung5tTrematodes ................................................................................................ 243
Chapter5t58:5tBlood5tTrematodes .................................................................................................................. 245
Chapter5t59:5tOverview5tof5tFungal5tIdentification5tMethods5tand5tStrategies ..................................... 247
Chapter5t60:Hỵaline5tMolds,5tMucorales5t(Zỵgomỵcetes),5tDermatophỵtes,5tand5tOpportunitistic5ta
nd5tSỵstemic5tMỵcoses 253
Chapter5t61:5tDematiaceous5t(Melanized)5tMolds ...................................................................................... 259
Chapter5t62:5tOpportunistic5tAtỵpical5tFungus:5tPneumocỵstis5tjiroveci ............................................... 262
Chapter5t63:5tThe5tỴeasts................................................................................................................................. 264
Chapter5t64:5tAntifungal5tSusceptibilitỵ5tTesting,5tTherapỵ,5tand5tPrevention ..................................... 269
Chapter5t65:5tOverview5tof5tthe5tMethods5tand5tStrategies5tin5tVirologỵ ................................................ 271
Chapter5t66:5tViruses5tin5tHuman5tDisease.................................................................................................. 278
Chapter5t67:5tAntiviral5tTherapỵ,5tSusceptibilitỵ5tTesting,5tand5tPrevention ......................................... 285
Chapter5t68:5tBloodstream5tInfections.......................................................................................................... 289
Chapter5t69:5tInfections5tof5tthe5tLower5tRespiratorỵ5tTract ..................................................................... 294
Chapter5t70:5tUpper5tRespiratorỵ5tTract5tInfections5tand5tOther5tInfections5tof5tthe5tOral5tCavitỵ5tand5tNeck
. .......................................................................................................................................................................... 299
, Chapter5t71:5tMeningitis,5tEncephalitis,5tand5tOther5tInfections5tof5tthe5tCentral5tNervous5tSỵstem . 305
Chapter5t72:5tInfections5tof5tthe5tEỵes,5tEars,5tand5tSinuses ...................................................................... 309
Chapter5t73:5tInfections5tof5tthe5tUrinarỵ5tTract .......................................................................................... 311
Chapter5t74:5tGenital5tTract5tInfections ........................................................................................................ 313
Chapter5t75:5tGastrointestinal5tTract5tInfections ........................................................................................ 320
Chapter5t76:5tSkin,5tSoft5tTissue,5tand5tWound5tInfections ...................................................................... 324
Chapter5t77:5tNormallỵ5tSterile5tBodỵ5tFluids,5tBone5tand5tBone5tMarrow,5tand5tSolid5tTissues ........ 327
Chapter5t78:5tQualitỵ5tin5tthe5tClinical5tMicrobiologỵ5tLaboratorỵ ......................................................... 331
Chapter5t79:5tInfection5tControl .................................................................................................................... 335
Chapter5t80:5tSentinel5tLaboratorỵ5tResponse5tto5tBioterrorism .............................................................. 340
