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READING GUIDE NOTES: WEEK 8 OF BIOCHEMISTRY (BIOSCI98) OF UCI

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Textbook notes corresponding to weekly reading guide of Biochemistry course (code BIOSCI98) at University of California, Irvine. Comes with reading guide, color-coded notes and diagram. Week 8.

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Glycolysis and Gluconeogenesis Regulations
• If irreversible steps were reversible/pathways happened at the same rate-> hydrolysis of ATP w/o any useful
work being done; generates heat -> Futile cycle!
• Hexokinase isozymes of muscle and liver are affected differently by their product: Glu-6-PO4.
• In myocytes: muscle hexokinase I/II are allosterically inhibited by glu 6-PO4.
○ Isozymes are temporarily inhibited by high [glu 6-PO4] levels.
• *High [P] can allosterically inhibit [E].*
• Carbohydrate metabolism:
○ Muscle consumes glucose for energy production.
○ Liver maintains blood glucose levels by consuming/producing glucose.
• In hepatocytes: INC [blood glucose] above 5mM -> hexokinase IV activity INCs; hexokinase IV is still not
Wk8RG saturated until it reaches Km=10mM.
Friday, February 22, 2019 10:58 AM
○ -> hexokinase I activity would stay the same; already saturated @ Km=0.2mM.
• **Remember, high [S] can saturate the [E], and won't INC activity anymore!**
• Hexokinase IV is NOT inhibited by [glu 6-PO4]. Can continue to operate in high [glu 6-PO4] levels.
• Hexokinase IV is inhibited by regulatory protein: HIGH [Glucose] -> HIGH [Fruc 6-PO4] -> regulatory protein
releases hexokinase IV from nucleus to cytosol. (COMPARTAMENTALIZATION: Yes!) Fig 15-25, pg. 591
• Hexokinase IV (glucokinase) and glu6-PO4 are transcriptionally regulated.
• PFK-1 and FBPase-1 are reciprocally regulated.
• PFK-1 has several regulatory sites @ which allosteric activators/inhibitors bind to. -> PFK site of regulation!
Week 8 • High [ATP] -> ATP allosterically inhibits PFK by binding to site and lowering substrate affinity! -> Less
glycolysis
• High [citrate] INCs inhibitory effect of ATP.
• ***Remember, glycolysis favors high [AMP/ATP] ratio!***
• High [AMP] -> AMP allosterically inhibits FBPase. -> Less gluconeogenesis
• Fructose 2,6 bisphosphate is a potent allosteric regulator of PFK-1 and FBPase-1 (formation and
breakdown of fru 6-bisphosphate). Fig 15-18, pg. 594
• Fructose 2,6-bisphosphate is an allosteric activator of PFK (INC glycolysis)
• Fructose 2,6-bisphosphate is an allosteric inhibitor of FBPase (DEC gluconeogenesis)
• PFK-2: catalyzes phosphorylation of Fru6-PO4 -> forms Fru2,6-bisPO4!
• FBPase-2: catalyzes breakdown of Fru2,6-bisPO4.
○ Both are enzymatic activities of the same bifunctional protein.
• Xylulose 5-PO4 is a key regulator of carb/fat metabolism. -> makes Fru2,6bisPO4.
• Dephosphorylation activates PFK-2 and inhibits FBPase-2.
• Dephosphorylation done by phosphatase 2A, activated by Xylulose 5-PO4.
• Also INCs synthesis of all enzymes required for fatty acid synthesis.
• The glycolytic enzyme pyruvate kinase is allosterically inhibited by ATP.
• Pyruvate -> PEP is under multiple types of regulation.
• When cell's energy levels are sufficient, oxidative phosphorylation (ETC) slows -> [NADH/NAD+] ratio INCs ->
inhibits CAC-> Acetyl-CoA builds up ->
○ Inhibits PDH complex -> inhibits CAC
○ Activates pyruvate carboxylase -> pyruvate forms OAA, converted into PEP!
• Transcriptional regulation of glycolysis and gluconeogenesis changes # of enzyme molecules.
• Ex. Insulin stimulates transcription of genes that encode hexokinases II/IV, PFK-1, pyruvate kinase, PFK-
2/FBPASE-2 (all regulatory enzymes of glycolysis).
○ Also slows gene expression of PEPCK and glu 6-phosphatase (gluconeogenic enzymes).
• Carbohydrate response element binding protein (ChREBP): TF that coordinates synthesis of anabolic enzymes
needed for carb/fat synthesis.


Citric Acid Cycle: Summary
• ETC RECAP: Compounds from the breakdown of macromolecules (except lipids) are oxidized from
CO2, w/ most of the oxidation energy temporarily held in FADH2 and NADH. (In aerobic conditions) said
e- are transferred to O2 and energy of e- flow is trapped as ATP.
○ Enzymes that catalyze carboxylation use biotin to activate CO2 and carry it to acceptors such as
pyruvate/ phosphoenolpyruvate.
○ Vertebrates cannot synthesize glucose from acetate or fatty acids that give rise to acetyl-CoA.
(Has to go thru glycolysis first to get acetyl-CoA precursor-- pyruvate).
• Acetyl-CoA's condensation w/ OAA -> citrate.
○ Catalyzed by citrate synthase.
○ Considered first and last step in CAC.
• Cyclic pathway = intermediates are not used up: citrate is converted into OAA (end of CAC) and
releases 2 CO2.
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I have a Biological Sciences degree from UC Irvine class of 2021. Most of my documents will be from courses I've taken during my time at UCI. No answers to exams or quizzes, just study guides and lecture notes.

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