Summary Structure and Function of Atoms and Molecules Essential Ideas

Structure and Function of Atoms and Molecules Essential Ideas Figure 1.1 Chemical substances and processes are essential for our existence, providing sustenance, keeping us clean and healthy, fabricating electronic devices, enabling transportation, and much more. (credit “left”: modification of work by “vxla”/Flickr; credit “left middle”: modification of work by “the Italian voice”/Flickr; credit “right middle”: modification of work by Jason Trim; credit “right”: modification of work by “gosheshe”/Flickr) Introduction to Chemistry Your alarm goes off and, after hitting “snooze” once or twice, you pry yourself out of bed. You make a cup of coffee to help you get going, and then you shower, get dressed, eat breakfast, and check your phone for messages. On your way to school, you stop to fill your car’s gas tank, almost making you late for the first day of chemistry class. As you find a seat in the classroom, you read the question projected on the screen: “Welcome to class! Why should we study chemistry?” Do you have an answer? You may be studying chemistry because it fulfills an academic requirement, but if you consider your daily activities, you might find chemistry interesting for other reasons. Most everything you do and encounter during your day involves chemistry. Making coffee, cooking eggs, and toasting bread involve chemistry. The products you use—like soap and shampoo, the fabrics you wear, the electronics that keep you connected to your world, the gasoline that propels your car—all of these and more involve chemical substances and processes. Whether you are aware or not, chemistry is part of your everyday world. In this course, you will learn many of the essential principles underlying the chemistry of modern-day life. 2 1.1 Introduction to Chemistry and Measurement By the end of this module, you will be able to: • Outline the historical development of chemistry • Provide examples of the importance of chemistry in everyday life • Describe the scientific method • Differentiate among hypotheses, theories, and laws • Provide examples illustrating macroscopic, microscopic, and symbolic domains Throughout human history, people have tried to convert matter into more useful forms. Our Stone Age ancestors chipped pieces of flint into useful tools and carved wood into statues and toys. These endeavors involved changing the shape of a substance without changing the substance itself. But as our knowledge increased, humans began to change the composition of the substances as well—clay was converted into pottery, hides were cured to make garments, copper ores were transformed into copper tools and weapons, and grain was made into bread. Humans began to practice chemistry when they learned to control fire and use it to cook, make pottery, and smelt metals. Subsequently, they began to separate and use specific components of matter. A variety of drugs such as aloe, myrrh, and opium were isolated from plants. Dyes, such as indigo and Tyrian purple, were extracted from plant and animal matter. Metals were combined to form alloys—for example, copper and tin were mixed together to make bronze—and more elaborate smelting techniques produced iron. Alkalis were extracted from ashes, and soaps were prepared by combining these alkalis with fats. Alcohol was produced by fermentation and purified by distillation. Attempts to understand the behavior of matter extend back for more than 2500 years. As early as the sixth century BC, Greek philosophers discussed a system in which water was the basis of all things. You may have heard of the Greek postulate that matter consists of four elements: earth, air, fire, and water. Subsequently, an amalgamation of chemical technologies and philosophical speculations was spread from Egypt, China, and the eastern Mediterranean by alchemists, who endeavored to transform “base metals” such as lead into “noble metals” like gold, and to create elixirs to cure disease and extend life (Figure 1.2). 3 Figure 1.2 This portrayal shows an alchemist’s workshop circa 1580. Although alchemy made some useful contributions to how to manipulate matter, it was not scientific by modern standards. (credit: Chemical Heritage Foundation) From alchemy came the historical progressions that led to modern chemistry: the isolation of drugs from natural sources, metallurgy, and the dye industry. Today, chemistry continues to deepen our understanding and improve our ability to harness and control the behavior of matter. Chemistry: The Central Science Chemistry is sometimes referred to as “the central science” due to its interconnectedness with a vast array of other STEM disciplines (STEM stands for areas of study in the science, technology, engineering, and math fields). Chemistry and the language of chemists play vital roles in biology, medicine, materials science, forensics, environmental science, and many other fields (Figure 1.3). The basic principles of physics are essential for understanding many aspects of chemistry, and there is extensive overlap between many subdisciplines within the two fields, such as chemical physics and nuclear chemistry. Mathematics, computer science, and information theory provide important tools that help us calculate, interpret, describe, and generally make sense of the chemical world. Biology and chemistry converge in biochemistry, which is crucial to understanding the many complex factors and processes that keep living organisms (such as us) alive. Chemical engineering, materials science, and nanotechnology combine chemical principles and empirical findings to produce useful substances, ranging from gasoline to fabrics to electronics. Agriculture, food science, veterinary science, and brewing and wine making help provide sustenance in the form of food and drink to the world’s population. Medicine, pharmacology, biotechnology, and botany identify and produce substances that help keep us healthy. Environmental science, geology, oceanography, and atmospheric science incorporate many chemical ideas to help us better understand and protect our physical world. Chemical ideas are used to help understand the universe in astronomy and cosmology. 4 Figure 1.3 Knowledge of chemistry is central to understanding a wide range of scientific disciplines. This diagram shows just some of the interrelationships between chemistry and other fields. What are some changes in matter that are essential to daily life? Digesting and assimilating food, synthesizing polymers that are used to make clothing, containers, cookware, and credit cards, and refining crude oil into gasoline and other products are just a few examples. As you proceed through this course, you will discover many different examples of changes in the composition and structure of matter, how to classify these changes and how they occurred, their causes, the changes in energy that accompany them, and the principles and laws involved. As you learn about these things, you will be learning chemistry, the study of the composition, properties, and interactions of matter. The practice of chemistry is not limited to chemistry books or laboratories: It happens whenever someone is involved in changes in matter or in conditions that may lead to such changes. The Scientific Method Chemistry is a science based on observation and experimentation. Doing chemistry involves attempting to answer questions and explain observations in terms of the laws and theories of chemistry, using procedures that are accepted by the scientific community. There is no single route to answering a question or explaining an observation, but there is an aspect common to every approach: Each uses knowledge based on experiments that can be reproduced to verify the results. Some routes involve a hypothesis, a tentative explanation of observations that acts as a guide for gathering and checking information. A hypothesis is tested by experimentation, calculation, and/or comparison with the experiments of others and then refined as needed. Some hypotheses are attempts to explain the behavior that is summarized in laws. The laws of science summarize a vast number of experimental observations, and describe or predict some facet of the natural world. If such a hypothesis turns out to be capable of explaining a large body of experimental data, it can reach the status of a theory. Scientific theories are well-substantiated, comprehensive, testable explanations of particular aspects of nature. Theories are accepted because they provide satisfactory explanations, but they can be modified if new data become available. The path of discovery that leads from question and observation to law or hypothesis to theory, combined with experimental verification of the hypothesis and any necessary modification of the theory, is called the scientific method (Figure 1.4). 5 Figure 1.4 The scientific method follows a process similar to the one shown in this diagram. All the key components are shown, in roughly the right order. Scientific progress is seldom neat and clean: It requires open inquiry and the reworking of questions and ideas in response to findings. The Domains of Chemistry Chemists study and describe the behavior of matter and energy in three different domains: macroscopic, microscopic, and symbolic. These domains provide different ways of considering and describing chemical behavior. Macro is a Greek word that means “large.” The macroscopic domain is familiar to us: It is the realm of everyday things that are large enough to be sensed directly by human sight or touch. In daily life, this includes the food you eat and the breeze you feel on your face. The macroscopic domain includes everyday and laboratory chemistry, where we observe and measure physical and chemical properties such as density, solubility, and flammability. Micro comes from Greek and means “small.” The microscopic domain of chemistry is often visited in the imagination. Some aspects of the microscopic domain are visible through standard optical microscopes, for example, many biological cells. More sophisticated instruments are capable of imaging even smaller entities such as molecules and atoms (see Figure 1.5 (b)). However, most of the subjects in the microscopic domain of chemistry are too small to be seen even with the most advanced microscopes and may only be pictured in the mind. Other components of the microscopic domain include ions and electrons, protons and neutrons, and chemical bonds, each of which is far too small to see. The symbolic domain contains the specialized language used to represent components of the macroscopic and microscopic domains. Chemical symbols (such as those used in the periodic table), chemical formulas, and chemical equations are part of the symbolic domain, as are graphs, drawings, and calculations. These symbols play an important role in chemistry because they help interpret the behavior of the macroscopic domain in terms of the components of the microscopic domain. One of the challenges for students learning chemistry is recognizing that the same symbols can represent different things in the macroscopic and microscopic domains, and one of the features that makes chemistry fascinating is the use of a domain that must be imagined to explain behavior in a domain that can be observed. 6 A helpful way to understand the three domains is via the essential and ubiquitous substance of water. That water is a liquid at moderate temperatures, will freeze to form a solid at lower temperatures, and boil to form a gas at higher temperatures (Figure 1.5) are macroscopic observations. But some properties of water fall into the microscopic domain—what cannot be observed with the naked eye. The description of water as comprising two hydrogen atoms and one oxygen atom, and the explanation of freezing and boiling in terms of attractions between these molecules, is within the microscopic arena. The formula H2O, which can describe water at either the macroscopic or microscopic levels, is an example of the symbolic domain. The abbreviations (g) for gas, (s) for solid, and (l) for liquid are also symbolic. Figure 1.5 (a) Moisture in the air, icebergs, and the ocean represent water in the macroscopic domain. (b) At the molecular level (microscopic domain), gas molecules are far apart and disorganized, solid water molecules are close together and organized, and liquid molecules are close together and disorganized. (c) The formula H2O symbolizes water, and (g), (s), and (l) symbolize its phases. Note that clouds actually comprise either very small liquid water droplets or solid water crystals; gaseous water in our atmosphere is not visible to the naked eye, although it may be sensed as humidity. (credit a: modification of work by “Gorkaazk”/Wikimedia Commons) MEASUREMENT By the end of this section, you will be able to: • Explain the process of measurement • Identify the three basic parts of a quantity • Describe the properties and units of length, mass, volume, density, temperature, and time • Perform basic unit calculations and conversions in the metric and other unit systems Measurements provide much of the information that informs the hypotheses, theories, and laws describing the behavior of matter and energy in both the macroscopic and microscopic domains of chemistry. Every measurement provides three kinds of information: the size or magnitude of the measurement (a number); a standard of comparison for the measurement (a unit); and an indication of the uncertainty of the measurement. While the number and unit are explicitly represented when a quantity is written, the uncertainty is an aspect of the measurement result that is more implicitly represented and will be discussed later. The number in the measurement can be represented in different ways, including decimal form and scientific notation. 7 (Scientific notation is also known as exponential notation; a review of this topic can be found in Appendix B.) For example, the maximum takeoff weight of a Boeing 777-200ER airliner is 298,000 kilograms, which can also be written as 2.98 × 105 kg. The mass of the average mosquito is about 0.0000025 kilograms, which can be written as 2.5 × 10−6 kg. Units, such as liters, pounds, and centimeters, are standards of comparison for measurements. A 2-liter bottle of a soft drink contains a volume of beverage that is twice that of the accepted volume of 1 liter. The meat used to prepare a 0.25-pound hamburger weighs one-fourth as much as the accepted weight of 1 pound. Without units, a number can be meaningless, confusing, or possibly life threatening. Suppose a doctor prescribes phenobarbital to control a patient’s seizures and states a dosage of “100” without specifying units. Not only will this be confusing to the medical professional giving the dose, but the consequences can be dire: 100 mg given three times per day can be effective as an anticonvulsant, but a single dose of 100 g is more than 10 times the lethal amount. The measurement units for seven fundamental properties (“base units”) are listed in Table 1.2. The standards for these units are fixed by international agreement, and they are called the International System of Units or SI Units (from the French, Le Système International d’Unités). SI units have been used by the United States National Institute of Standards and Technology (NIST) since 1964. Units for other properties may be derived from these seven base units. Base Units of the SI System Property Measured Name of Unit Symbol of Unit length meter m mass kilogram kg time second s temperature kelvin K electric current ampere A amount of substance mole mol luminous intensity candela cd Table 1.2 Everyday measurement units are often defined as fractions or multiples of other units. Milk is commonly packaged in containers of 1 gallon (4 quarts), 1 quart (0.25 gallon), and one pint (0.5 quart). This same approach is used with SI units, but these fractions or multiples are always powers of 10. Fractional or multiple SI units are named using a prefix and the name of the base unit. For example, a length of 1000 meters is also called a kilometer because the prefix kilo means “one thousand,” which in scientific notation is 103 (1 kilometer = 1000 m = 103 m). The prefixes used and the powers to which 10 are raised are listed in Table 1.3. Common Unit Prefixes Prefix Symbol Factor Example femto f 10−15 1 femtosecond (fs) = 1 × 10−15 s (0. s) pico p 10−12 1 picometer (pm) = 1 × 10−12 m (0. m) nano n 10−9 4 nanograms (ng) = 4 × 10−9 g (0. g) micro µ 10−6 1 microliter (μL) = 1 × 10−6 L (0.000001 L) Table 1.3 8 Common Unit Prefixes Prefix Symbol Factor Example milli m 10−3 2 millimoles (mmol) = 2 × 10−3 mol (0.002 mol) centi c 10−2 7 centimeters (cm) = 7 × 10−2 m (0.07 m) deci d 10−1 1 deciliter (dL) = 1 × 10−1 L (0.1 L ) kilo k 103 1 kilometer (km) = 1 × 103 m (1000 m) mega M 106 3 megahertz (MHz) = 3 × 106 Hz (3,000,000 Hz) giga G 109 8 gigayears (Gyr) = 8 × 109 yr (8,000,000,000 yr) tera T 1012 5 terawatts (TW) = 5 × 1012 W (5,000,000,000,000 W) Table 1.3 Link to Learning Need a refresher or more practice with scientific notation? Visit this site ( SI Base Units The initial units of the metric system, which eventually evolved into the SI system, were established in France during the French Revolution. The original standards for the meter and the kilogram were adopted there in 1799 and eventually by other countries. This section introduces four of the SI base units commonly used in chemistry. Other SI units will be introduced in subsequent chapters. Length The standard unit of length in both the SI and original metric systems is the meter (m). A meter was originally specified as 1/10,000,000 of the distance from the North Pole to the equator. It is now defined as the distance light in a vacuum travels in 1/299,792,458 of a second. A meter is about 3 inches longer than a yard (Figure 1.23); one meter is about 39.37 inches or 1.094 yards. Longer distances are often reported in kilometers (1 km = 1000 m = 103 m), whereas shorter distances can be reported in centimeters (1 cm = 0.01 m = 10−2 m) or millimeters (1 mm = 0.001 m = 10−3 m). 9 Figure 1.23 The relative lengths of 1 m, 1 yd, 1 cm, and 1 in. are shown (not actual size), as well as comparisons of 2.54 cm and 1 in., and of 1 m and 1.094 yd. Mass The standard unit of mass in the SI system is the kilogram (kg). A kilogram was originally defined as the mass of a liter of water (a cube of water with an edge length of exactly 0.1 meter). It is now defined by a certain cylinder of platinum-iridium alloy, which is kept in France (Figure 1.24). Any object with the same mass as this cylinder is said to have a mass of 1 kilogram. One kilogram is about 2.2 pounds. The gram (g) is exactly equal to 1/1000 of the mass of the kilogram (10−3 kg).