Questions And Answers
blood and bone marrow specimens - ANSWER - ship overnight at room temperature or
with ice packs
isolated RNA - ANSWER - storage at room or fridge temp no recommended without
stabilization
- can be stored in ethanol at -20C for several months
- long term storage is best in ethanol at -70C
clinical sensitivity of an assay - ANSWER TP/(TP+FN)
- lowest level detected at least 95% of the time
clinical specificity of an assay - ANSWER TN/(TN+FP)
- negative samples are always negative and positive results are true positives (TP)
accuracy of an assay - ANSWER (TN+TP)/(TN+TP+FN+FP) X 100
TN = true negative
discontinued SOPs are kept for at least _____ - ANSWER two years
sensitivity control - ANSWER defines the lower limit of detection for more meaningful
interpretation of negative results
amplification control - ANSWER a target that should always amplify
- used to distinguish true negative amplification results from false negative resulting
from amplification failure
high positive, low positive and negative controls - ANSWER are included in each run
for quantitative methods
internal controls - ANSWER - run in the same reaction mix as the test specimen - used
in methods requiring detection of a target-specific product, or relative amounts of target
- in PCR distinguishes false-negative results from failed amplifications
quantitative results - ANSWER - should be within the linear range of the assay
, standard thermal cyclers - ANSWER decline in temperature control over time
automatic pipetters - ANSWER - checked for accuracy every 6 mo using gravimetric
methods (weighing specific volume of water)
capillary systems - ANSWER clean buffer and polymer delivery channels and replace
polymer at least twice per month
annually - ANSWER - SOPs are reviewed
- test fume hoods and laminar flow hoods (or if hood is moved or installed) - test
spectrophotometers used to measure DNA, RNA, protein concentrations, and
colorimetric assays and turbidity - test electrophoresis power supplies
- test centrifuges and microcentrifuges (using a tachometer)
types of probes - ANSWER genomic, cDNA, oligonucleotide, plasmid, or riboprobe
analyte specific reagents (ASR) - ANSWER probes, primers, antibodies, and other test
components that detect a specific target, such as a cell surface protein or DNA mutation
NFPA hazard diamond - ANSWER red - flammability
blue - health hazard
yellow - stability
white - special hazards O (oxidizer) , W (dangerous reactivity to water)
proficiency testing - ANSWER analysis of external specimens from a reference source
supplied to independent laboratories
- used to asses skills of personnel
acrylic shielding - ANSWER required for working with gamma emitters, such as 32^P
and 33^P
in situ results (eg FISH) - ANSWER documentation should include images of at least
one normal cell with at least two abnormal cell results
resequencing - ANSWER repeated sequencing across the same area for known
sequence changes
- s.t. performed on only one template strand; both strands is best
test results are not released to the following parties without the patient's expressed